Coregonus clupeaformis (lake whitefish): 121554490
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Entry
121554490 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore complex protein Nup50
KO
K14295
nuclear pore complex protein Nup50
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121554490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121554490
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121554490
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUP50
Ran_BP1
Motif
Other DBs
NCBI-GeneID:
121554490
NCBI-ProteinID:
XP_045067712
LinkDB
All DBs
Position
39
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AA seq
470 aa
AA seq
DB search
MAKRIADKELTDRNWDQEDEGEEQAGTFSIASDDVMKSRPIKKAKRRAAGSEGQSGGSFK
GFKGFSWPLRRNPGQPRGITAFSGFGNGAGFKLSNGNSVTPVTPAFTGFASPAATKTTTP
GSLTFSGPPSSGDITEQQPNGSSPVVSSLSLSSGSCTSSDNQEYRKQLTALNCSVRDWIT
KHVNRNPLCDLNPIFRDYEKHLASIDKKYGGAGGSGAGTGGSASGSKAAAPEEKQPAGTT
PPSSSSTAGSAATAPLFSFSKDKDGTTPASEKSSSAAPAPLPAGISFNLGQKALSSGGSP
NVSFSSSSSSSSLFGGTSLPSFSFSGAKAEAVPTQTTEENGEESDEPPKVEVQEIKESDA
FYSKKCKLFYKKETEFKEKGVGTLHLKTTPEGKTQLIVRADTNLGNILLNIMVQASIPCS
RMGKNNVMVVCVPNPVVDHSNPTNPVAMLIRVKTAEDADELHNILEEKKV
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaggatcgctgacaaagagctgaccgacaggaactgggatcaggaggatgaa
ggagaggagcaggcagggacgttttccatcgctagtgatgatgtcatgaagagcaggccc
atcaagaaggccaagcgtcgggctgctggttcagaggggcagagtggaggatcgttcaaa
gggtttaaagggttctcctggcccctccgtcggaacccgggccagccacggggaatcacg
gccttctccgggttcgggaatggggcagggttcaaactgtccaatgggaacagtgttaca
cccgtcactccagccttcaccgggttcgcctcgcctgctgccaccaagaccaccacacct
ggttcattaacattcagcggccccccctccagcggtgacatcacagagcagcagcctaac
ggttcctcccccgtggtttccagtctgtctctgagctccggctcctgtacctcctctgac
aaccaggagtacaggaagcagctcacagcgctcaactgctcggtcagggactggatcacc
aagcacgtcaacagaaaccctctctgcgacctcaaccccatcttcagggactatgagaag
cacctggccagcatcgacaagaagtacggaggggctggagggagtggcgctgggactggg
ggctcggcgagcggtagcaaggcagcagcaccggaggagaagcagccagccggtaccaca
cccccctcctcctctagtaccgccggctcggcagccacagctccactcttctccttcagc
aaggacaaggacggcaccactccagcctcggagaaaagctccagcgccgctcctgctccg
ctccccgctggcatcagctttaacttgggccagaaggctctgagctctggaggatctcct
aacgtctccttctcctcctcctcctcttcctcctccctgtttggaggcacctctcttcct
agcttctccttcagtggggccaaggctgaggctgtccccacccagacaacagaggagaat
ggagaggagtctgatgaaccacccaaggttgaagtccaagagatcaaggagtctgatgcc
ttctactctaagaagtgtaaactgttctataaaaaagagactgagttcaaggagaaggga
gttggaacgctgcatctgaaaacaaccccagagggaaagactcagctgatagtccgcgct
gacactaacctgggtaacatcctgttgaacatcatggtccaggcctccataccgtgttcc
aggatggggaagaacaacgttatggtggtatgtgttcctaaccctgtggtggaccacagc
aaccctaccaaccctgtcgccatgctcatcagggtgaagacagcagaggacgctgatgaa
ctgcacaacatactggaggagaagaaagtttag
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