Coregonus clupeaformis (lake whitefish): 121554595
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Entry
121554595 CDS
T08357
Symbol
ddx3xa
Name
(RefSeq) DEAD-box helicase 3 X-linked a isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
121554595 (ddx3xa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121554595 (ddx3xa)
03041 Spliceosome [BR:
cclu03041
]
121554595 (ddx3xa)
03036 Chromosome and associated proteins [BR:
cclu03036
]
121554595 (ddx3xa)
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121554595 (ddx3xa)
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121554595 (ddx3xa)
mRNA cycle factors
Common to processing body (P body) and stress granule
121554595 (ddx3xa)
Spliceosome [BR:
cclu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
121554595 (ddx3xa)
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
121554595 (ddx3xa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
121554595
NCBI-ProteinID:
XP_041724166
LinkDB
All DBs
Position
4:22627694..22655496
Genome browser
AA seq
746 aa
AA seq
DB search
MSHVVVDHPHGLDQQLAGLDLNSDGQRGGTGRRYIPPHLRNKEVSKNENAYSSGRQYGYS
VPPPVNFYSPGGWDGGRSNGFANGYHDNSNAGFGGRGGPPRNDRGGRGSFRGNSMGGASF
NQPMHIAGFGGGQDGVGWGGTPRQDAAYNSFGGRGKSSFYSDRGSSGGRGGYQRGGYGGG
GNNRWQEDSRDDEDWSKPSPANERLEAELFSSGNTGINFEKYDDIPVEATGSNCPPHIDS
FHDVDMGEIIMSNIALTHYTRPTPVQKYAIPVIKSKRDLMACAQTGSGKTAAFLVPVLSQ
IYTQGPGDAAAAGKNGQDSGKYGRRKQYPLSLVLAPTRELALQIYEESRKFAYRSRVRPC
VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDMGFE
PQIRRIVEQDTMPPKGIRQTMMFSATFPKEIQMLARDFLEDYIFLAVGRVGSTSENITQK
VVWVEDGDKRSFLLDLLNATVIPSDAPDVQEAAVTPGKESLTLVFVETKKGADALEDFLY
REGYACTSIHGDRSQRDREEALNQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDI
EEYVHRIGRTGRVGNLGLATSFFNDKNSNITKDLLDILVEAKQEVPSWLESLGYENQHKG
NTGRGRSKRFSSGGFGARDYRQTPGGGGGFGGGGGRGGPRTGGYGGGSRGGFGGGGFGGG
NSYGGNDAGYGGNYSHSGSGTDWWGN
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcgtcgatcatccacatggtctagatcagcagcttgctggtctagac
ttgaactctgacggacagagaggaggcaccggcaggcgttacattccacctcacttgagg
aacaaagaggtttccaaaaacgaaaatgcttattcctctggtagacagtacggttattca
gtgccacctccagtgaacttctactctccaggaggatgggacggcggacgcagcaatggc
tttgccaatggttaccatgacaacagcaatgcgggcttcgggggacgcggcgggcctccc
cgaaatgacagaggtgggcgtggcagcttccgcggtaacagcatgggtggcgcctcgttt
aatcagccaatgcacatcgcagggtttggtggtggacaagatggtgtaggctggggaggt
actcccagacaagacgcggcctataacagctttggagggaggggcaagtcttccttctac
agcgaccgtggatcatcagggggcagaggaggttatcagcgtggaggttatggcggtgga
ggcaacaaccgctggcaggaagactccagggacgatgaggactggtccaaacccagcccc
gccaacgaacgactggaagcagagctgttctcaagcgggaacacgggtattaactttgag
aaatacgacgacattcctgtggaggccactggatccaactgcccgccacacatcgatagt
tttcatgatgtggacatgggtgagatcatcatgagcaacattgccctaacccactacacg
cggcccacccccgtccagaaatacgctatcccggtcatcaagtccaagagggacctcatg
gcctgtgctcagactggctctggtaagactgcagccttcctggtgccagtgctgagccag
atctacacacaggggcctggagacgctgcggcggctggcaagaacggacaggacagcggt
aaatatgggcgccgtaagcagtatcctctctctctggtcctggctcccaccagagaactg
gccctgcagatctacgaagagtccagaaagtttgcgtaccgctcccgcgtgcgtccctgt
gtggtgtacggaggagctgacatcggccagcagatcagagacctggagcgaggctgccac
cttctggtggccacacccggtcgcctggtggacatgatggagaggggcaagatcggcctc
gactactgcaactacctggtgttggatgaggctgacaggatgttggacatgggttttgag
ccccagatcagacgcatcgtggagcaggacaccatgccccctaaaggcatccgtcagacc
atgatgttcagcgctaccttccccaaggagatccagatgctggcgcgtgatttcctggag
gactatatcttcctggccgtgggccgcgtgggctccacctcagagaacatcacccagaag
gtggtgtgggtggaggacggcgacaagaggtccttcctcctggacctgctcaacgctaca
gtcatccccagtgatgctcctgatgttcaggaggctgcagtgacacccggtaaggagtct
ctgacgttggtgtttgtggagaccaagaagggagcggacgccctggaggactttctgtat
cgcgagggctacgcctgcaccagtatccacggtgatcgctcccagagagaccgagaggag
gcgctgaaccagttccgctctggtcgctgccccattctggtggccaccgcagtggctgcg
cggggtttggacatctctaacgtcaagcacgtcatcaactttgacctgcccagcgacata
gaggagtatgtccaccgtatcggtcgtacaggccgcgtggggaacctgggtctggccaca
tcgttcttcaacgacaagaacagcaacatcaccaaagacctgctggacatcctggtggag
gccaagcaggaggtaccgtcctggctggagagcctgggttatgagaaccagcacaagggc
aacacgggacgcggacgctccaagagattctcctctggtggattcggtgccagggactac
cgtcagacacccggcggcggcggcggcttcggcggtggtggtgggcgcggtggcccacgc
actgggggttacggaggaggaagccgtggcggatttggtggaggtggctttggaggcggg
aactcctatggcggcaacgacgccggctatggtggcaactacagtcactccggtagtgga
accgactggtggggcaactag
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