Coregonus clupeaformis (lake whitefish): 121554662
Help
Entry
121554662 CDS
T08357
Name
(RefSeq) DENN domain-containing protein 4C
KO
K20163
DENN domain-containing protein 4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121554662
Membrane trafficking [BR:
cclu04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
121554662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
uDENN
dDENN
PPR_2
DUF2464
PPR_3
PPR_long
PPR
Motif
Other DBs
NCBI-GeneID:
121554662
NCBI-ProteinID:
XP_041724264
LinkDB
All DBs
Position
39:complement(16995258..17082026)
Genome browser
AA seq
1976 aa
AA seq
DB search
MIEDKGHRVTDYFVVAGLTDKSTPLEQDLSETKSSGPKAPITDLAIINKSAGETVPEGFT
CIDSTYSGQQANLNHGSLKSHELFLCYKRGRDKPPLIDIGVLYEGKERLIQGCEVIQATP
YGRCANVNNSSATSQRIFITFRRAPPVQPQNSLAVTDICVIVTSKGETPPHTFCKVDKNL
NCGMWGSSVFLCYKKSVSASNSINYKAGLIFRYPEDDYESFPLSESVPLFCLPMGAKIEC
WAPNTRYPLPVFSTFVLTNSSGEKVYGAAIQFYEAYPIDLLSEKQKVQLGLLTTVEKMMI
PNRTVNTNKCICLLSRWPFFESFRKFLMFLYKLSVSGPHPLPIEKHISHFMHNVSFPSPQ
RPRILVQLSAHDTLMLAQPVCTPLPLSGADYSTLLMNLGSENCATLLHFVLLESKILLHS
LRPAVLTGVAEAVVAMIFPFQWQCPYIPLCPLSLAGVLNAPCPFIVGVDSRYFDLYDPPP
DVVCVDLDTNTIYLSDEKRHSNWKNLPKKPCKSLFTSLTNLHHQLGIVRRTAQEGLAVEM
TPIEADFTWHKKMTSLEMEIQEALLRFMANILKGYRYYLKPITQAPSEKATSADSLYDLQ
GFLKSRERTHQKFYSQLTKTQIFIRFIEECTFVSDKDTGLAFFDDCIEKLFPSDKGSDKG
TKVEGESSEDTKLMELDESQKSEHTVFVMPPEPPATEDGSDPPAYYSYKSFPRLRLDLFD
RPREVIPALRSSTPGASLSNSPALLAKRTKQEIKLAYKMAKRFYSNPPLWAKCLFSHCYS
LWFICLPVGVRLAQSKSWAMQQAYNVLLKMRTSEVEVLDEVCYRVVMQLCGVYGQPVMAV
RVLVEMKKAGVHPNAITYGYYNKAVLEGPWPSRNRSGLFMWAKVRNVARAVSQFKQAVHR
TPAMNGPTIITTGSDIGQSVGGSASSDGDRLSHWSVDSSSEANGEDHKLFARSLIIGDAT
DNHCSRGVQSDQGYGSKDELHQDLVDLAQSAALVIAVDQCSKPKAQHNGGDIAGSLDSAV
VVLEPPGPVKALPHVPSIVKLSTGASFDTALKRGDTAPGKLFSLRSQSEDVSLLEEGKSA
APGGSGVAGPAVQGQVQRQKAFSERSCSFSAESRAGMLMEKHGVDHIASRMGADARILAA
ALSGGGTNPPPTKPLPSAAKALFKDLELESEEGRGPTLGKLSEEEGPVKDPTPLEEEEGI
WKEEKRMKGGRKEAGEKDEIGLKLEEEDEERDSGGRGSISLPTLEIKEVQVGADPLSLLV
SEHEELASVTSQELPQSLPAVVSRNLADEIEMYMSLRSQLGPKSCSMELHQGGQGGDSSP
DAAPVTQPLERRSSLPMPPVKHPGGSSGDTTPKHSPAAVTRSKTFAVKASRSPASSRGVV
ANPRSSSLTALVRSSQSGSLGSVINSISGMKMDALLSGPKMDVLKSGMKQAGNLASKVWG
AVASAYSYSDDEDELGPGYRDRDSFPAGLDESMLLGGGGRDSPTHRGPTQGLVSNGLTQS
STSLGSSSGSSDTGRGPHSTHVTPGRPGRGPDSERSDQGSHHASSSSIYQNCALEVLMSS
CSQCRSCECLVYDEEIMAGWTADDSNLNTTCPFCRTAFLPLLHVEFNDLRTTTGFYLNPS
ASGDSIHSTSHQATATDSTENKVGGAVDTPPPDLISFPESEDPGEAPASQTATHKSLVPE
PAQSDPLGLLEHQAGKRGTSLTRSNSVGGPLQSLVDQRQPEHSVSTTSLPCSLTEMDGLG
QKRSNPMPVSVPYLSPLVLRKELETLLENEGDQVIYTNKFLSQHPIIFWNLVFYFQRLDL
PSYLPGLILTSEHCNNGVQLPQTSLSQDSKQVYVQLLWDNINLHQEPGDPLYQSWRTLME
KKGTLAPTDYQETRTLLNSIVRSIQTNDVYGPINLLLREVKRNPEVKRQRGIYREILFLA
LVALGRENIDVEAFDREYRLAFDELSPEQLKALHKIDRPPNSNVQWCLKCFGAPVI
NT seq
5931 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaggacaagggtcaccgtgtgaccgactactttgtggtggccgggttgacagac
aagtccacgcccctggagcaggacctgtcggagacaaagtccagcgggcccaaggcgccc
attactgacctggccatcatcaacaagtcggcgggcgagactgtgccggagggcttcacc
tgcatcgacagcacctacagtgggcagcaggccaacctcaaccacggcagccttaagagc
cacgagctgttcctctgctacaagaggggccgcgacaagcccccgctcatcgatattggg
gtgttatacgaagggaaggagcgtctcatccagggctgtgaggtcattcaggccacgccg
tacggccgctgtgccaacgtcaacaacagctctgccacctcgcagcgcatcttcatcacc
ttccgccgtgcgccgcccgtccagccccagaactcactggccgtcaccgacatctgcgtc
atcgtcactagcaagggcgagacgccgccgcacaccttctgcaaggtggacaagaacctc
aactgtggcatgtggggctccagcgttttcctgtgctacaagaaatcagtgtcggcgtcc
aattccatcaattacaaagccggcctcatcttccgctacccagaggatgactatgagtcc
ttccccctgtctgagtctgtgcccctgttctgcctccccatgggggctaagatcgagtgc
tgggcccccaacacacgctaccctctgcccgtcttctccacctttgtgttaaccaactcc
tctggggaaaaggtgtacggcgcagccatccagttctacgaggcctaccccatagatctc
ctcagtgagaagcagaaggtgcagctgggcctgctcaccaccgtggagaagatgatgatc
cccaaccggacggtcaacaccaacaagtgcatctgcctgctctcccgctggcccttcttc
gagtctttccgcaagttcctcatgttcctctacaagctgtccgtctcgggcccccacccg
ctgcccatcgaaaagcacatctcgcacttcatgcacaacgtgtccttcccctcacctcag
aggcccagaatcttggtccagctctctgcacatgacaccttgatgctcgcacaacctgtg
tgcactcctctgcctctcagtggggcagactacagtacgttgctgatgaacctgggctca
gagaactgtgccacgctgctgcactttgtcctgctggagagtaagatcctgcttcactcc
ctgagacccgctgtactcaccggggtagcagaggccgtagtggctatgatctttccattc
cagtggcagtgcccgtacatccccctgtgccccctctccctggcgggggtcctcaatgcc
ccctgtcccttcatcgtgggcgtggactcccgctactttgacctttatgaccccccgccg
gacgtggtctgtgtggacctggacaccaacactatttacctgtctgatgagaagagacac
agtaactggaaaaacctcccaaagaaaccctgcaagagtctgtttacctccctgaccaac
ctgcaccaccagttgggcatcgtgcgtcggacagcccaagagggattggcagtggagatg
acccccatcgaggcggacttcacctggcacaagaagatgacctccctggagatggagatc
caagaggccctgctgcgcttcatggccaacatcctgaagggctaccgctattacctaaaa
cccatcacccaggccccctccgagaaggccacctccgcagactcactatacgacttacag
gggtttctgaagagcagggagcgcacccaccagaagttctactcccagctgaccaagact
cagatcttcatccgcttcatcgaggagtgcacgttcgtcagcgacaaggacacgggcctg
gccttcttcgatgactgcattgagaagctatttccctccgataaaggcagtgacaaaggc
actaaggtggagggtgagtcctcagaggacaccaagcttatggaactagacgaatcacag
aagagcgagcacacggtcttcgtcatgcctccagaaccccctgccactgaggatgggtct
gacccccctgcctactacagttataagagttttcctcggttgcgtttggacctgtttgac
cgccccagggaggtgataccagcgctgaggagtagtacaccaggggccagcctgtccaac
agccctgcactactggccaagaggaccaagcaggagatcaagctggcctacaagatggcc
aagcgcttctactccaaccctccgctgtgggccaagtgtctgttcagccactgctacagc
ctgtggttcatctgtctgcccgtgggggtgaggctggcccagtccaagagctgggccatg
cagcaggcctacaacgtcctgctgaaaatgaggacctctgaggtggaggtgctggatgag
gtgtgttaccgtgtagtgatgcagctgtgtggcgtgtacggtcagcctgtcatggccgtc
cgtgttctggtggagatgaagaaggcgggagtgcaccctaatgctatcacctatggatac
tacaacaaggctgttctggaaggcccctggcccagtcggaaccgaagcggtctcttcatg
tgggccaaggtgcgcaacgtggcgcgcgctgtctctcaattcaaacaggcagtccaccgg
acgcccgccatgaatggacccaccatcatcacgacaggaagtgatattggccaatcagtg
ggcggctcggcgagcagcgacggcgaccggctgagccactggagtgtggacagctccagc
gaggcgaatggagaggatcacaagctgttcgcacgcagcctcatcataggagacgccacg
gacaaccactgcagcagaggagttcagtctgatcaaggctatggctctaaagatgagttg
catcaggacctagtggatttggctcaatcagcagcccttgtaatcgccgtggatcagtgc
agcaagcccaaagcacagcacaacggtggggacatagctggctcgttggacagtgcagtg
gttgtattggagccccccggccctgttaaagccctcccacatgtccctagcatcgtcaag
ctgtccacaggggcgagttttgataccgctttgaagagaggagacactgcccctgggaag
ctgttctctctgcgcagccagagcgaggacgtctccctgctggaggagggtaagtctgca
gccccgggtggctccggggtggcggggcctgcagtccaggggcaggtccagcgccagaag
gccttctcggagcgcagctgcagcttcagtgccgagagccgtgccggcatgctgatggag
aaacatggtgtggaccacatcgccagccgcatgggcgcagatgcacggatcttggcggcg
gctctctctgggggcggcaccaaccccccgcctacaaagccgcttcccagtgcggccaaa
gccctttttaaggacctggagttggagtctgaggaggggcggggtccgactctggggaaa
ctgtcagaggaggaggggccagtaaaggacccaaccccactggaggaggaggaggggata
tggaaagaggagaagaggatgaaaggtggcaggaaggaggcaggagaaaaggatgagatt
ggtctaaagttggaggaggaagatgaggaaagagattcaggggggaggggctctatctct
ctgccaaccttggagattaaggaggtgcaggtaggggcagaccccctctccctccttgtc
tcggagcacgaggagttagcctccgtaaccagtcaggagctgccgcaatccctgcctgcc
gtggtgtcccgaaacctggccgacgagattgagatgtacatgagcctccggagccagctt
ggccccaaatcctgtagcatggagctccaccaggggggccagggaggggactcttccccg
gatgctgccccagtgacgcaacctctagaacggaggtccagcctccccatgccccctgtc
aaacacccaggggggtcaagcggggacacgacgcctaaacacagccccgcagccgtcaca
cgctccaagaccttcgctgtgaaggcctccaggagccctgcctcttccaggggtgttgtg
gccaacccaaggtcatcgtcgctgactgcgctggtgaggtcgtcacagagcggttcgctg
ggctcggtcatcaactccatctcgggcatgaagatggacgccctgctctcgggtcccaag
atggacgtgttaaagtcaggcatgaagcaggcagggaacctggccagcaaggtgtgggga
gccgtggcctcagcctactcttactccgacgacgaggatgagctgggcccgggctatagg
gatagggacagtttccctgctgggctggatgagtccatgctgttggggggtggaggaagg
gacagtcccacccacagagggcccacccaaggcctggtgtccaacggcctgacccagagc
agcaccagcctgggcagcagcagtgggagcagcgacacagggagaggaccccactccaca
catgtgactccaggaaggccaggcagaggtccagactctgagaggtcagaccaaggctcc
caccacgccagctcctctagtatctaccagaactgtgccctggaggtgctgatgtccagc
tgctcccagtgtcggtcctgtgagtgtctggtgtacgatgaggagatcatggcaggctgg
acggcagatgattccaacctcaacaccacctgtcccttctgccgcaccgccttcctgccc
ctgctccacgttgagtttaacgacctgcgcaccaccacagggttctacctgaatcccagt
gcatcaggagacagtatccacagcaccagccaccaggccacagccacggactccaccgag
aacaaggtggggggtgcagtggacaccccgcccccggacctcatcagcttcccagaatct
gaggacccaggagaggccccggccagccagactgccacgcacaagagtttggtaccggag
ccggctcagtcggaccccctgggcctgctggagcaccaggcagggaagagggggacgtct
ctgacacgcagcaacagcgtgggcgggcctctacagagcctggttgaccagagacaacca
gaacatagtgtttccaccaccagcttgccctgcagcctgacagagatggatggcctggga
cagaagcggtccaacccaatgccagtgtctgtgccctacctcagccccctggtcctccgc
aaagaactagagaccctactggagaacgagggagaccaagtcatctacaccaacaagttc
ctgagccagcaccccatcatattctggaacctggtgttttatttccaacgcctggacctg
cccagctacctgcctggcctcatcctcacctcagaacattgcaacaatggagtacagctc
ccccagacatccctgtctcaggacagtaaacaggtgtatgttcagctgctgtgggacaac
atcaacctgcaccaggaacctggggatcccctctaccagagctggaggaccctgatggag
aagaagggcaccctggcccccacggactaccaggagacacggaccctcctgaacagcatc
gtccgcagcatccagaccaacgacgtctacggcccaatcaacctgctcctccgggaggtc
aagaggaacccagaggtcaaacgccaaaggggtatctatagggagatcctcttcctggcg
ctggtggcattgggacgggagaacattgacgtcgaggcctttgaccgtgaataccgcctg
gcctttgatgagctgagcccagagcagctcaaggccctgcacaagattgaccggccaccc
aacagcaacgtccagtggtgcctcaagtgcttcggtgcgccagtcatctga
DBGET
integrated database retrieval system
