Coregonus clupeaformis (lake whitefish): 121554680
Help
Entry
121554680 CDS
T08357
Name
(RefSeq) dynactin subunit 1 isoform X1
KO
K04648
dynactin 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04814
Motor proteins
cclu05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
121554680
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
121554680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121554680
03036 Chromosome and associated proteins [BR:
cclu03036
]
121554680
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
cclu04812
]
121554680
Membrane trafficking [BR:
cclu04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
121554680
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Dynactin complex
121554680
Cytoskeleton proteins [BR:
cclu04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Dynactins
121554680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dynactin
CAP_GLY
Motif
Other DBs
NCBI-GeneID:
121554680
NCBI-ProteinID:
XP_041724286
LinkDB
All DBs
Position
39:11206381..11239182
Genome browser
AA seq
1271 aa
AA seq
DB search
MSADGGGKPAKVGSVVEVIGKGQRGTVAYVGATLFATGKWVGVILDEPKGKNDGTVQGKR
YFQCDENCGIFVRQSQIQLVEDGSSATSPDTPESATAKFLPKQKDIPEIPKSVKQMPIAK
KFVTRRSTKWNTPGRLSSSSSLPSLLMAPRATGLSSSRSREDVSEGSLSSKGALGAPVVP
MPSGIPATPGAPPPVTPSKAEPPASKQEEESLRGQVKDLEEKLETLKMKRAEDKVKLKEL
EKHKIQLEQLQEWKTKMQEQQADLQKQLKEAKKDAREALEAKDRYMEEMSDTADAIEMAT
LDKEMAEERSESLQVEVESLKEKVEELTMDLEIIKHEVEEKGSDGAASSYHVKQLEEQNS
RLKDALVRMRDLSSSEKQEHVKLQKQMEKKNGELETLRTQKEKLQDEMKQAEATIDELKE
QVDAALGAEEMVETLTERNLDLEEKVRELRETVTDLEAINEMNDELQENSRETEMELREQ
LDLNGARVREAQKRVEAAQETVADYQQTINKYRELTASLQDANRELTSVQNANAEQVQQP
PAELFDFKIKFAETKAYAKAIEMELRKMEVGQANRQVSLLTSFMPDSFLRHGGDHDCILV
LLLIPRLICKAELISKQAQEKFDLNSNPVERTGTKMRGPPGEQLSFASGLVYSLTLLQAT
LHKYEQALNCCSVEVYKRMGTLYSEMSVHERSLDFFIDLLHKDQLDETVHVEPLTKAIKY
YQQLYSIHLAEQTEDCTVQLADHIKFIQSALDCMSAELVRLRAFLQPGQEGVALNILLKD
LDTTCSDIKQFCKKIRRRMPGTDVPGVPAALAFGAPVSETLTDCRRQLTRVVAVLQEVAA
AGAQMVAPLGEQEGLNALKLDDVAFKAVEQVYGSQGLNPHECLRQSCSSVISTMNKMATA
MQEGEYDAERPQGKAPPVEARAAALRAEITDAEGLGVKLEDRDTVIKELKKSLKIKGEEL
SEAHVRLSLLEKKLDTSTKDADERVEKIQTKLDETLALLKKKEKEFEETMDALQADIDQL
EAEKAELKQRLSSQSKMTIEGLRAPPASGIASIVTGSAGAGVVPGAGGLSGPMQVVDSPL
LRQQVAAQRLGIKHLKNENNRLKAEKMRAQLASLPPLHVPKLHLREATSSSSPPTEGPLH
GALYRKTDQLLGTLLKMTATVKVVDITGKTPVSASAQLLDQTARLQSLSDALDKLKGEVS
EHVVSQQPGAKVSSDFATFPISSFVKAKEEKQGGTVFVGRVAIPCAKGQEQVHRLVLSQQ
HLQQVHRLLLT
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcagacgggggaggcaagcctgccaaagtgggctcggtggtggaggtgatcggt
aagggccagcgtggcactgtggcatatgtgggcgctacgctctttgccacgggcaagtgg
gtgggtgtgatcctggacgagcccaagggcaagaatgacggcacggtccaggggaagaga
tacttccagtgtgatgaaaactgcggcatctttgtgcgccagtcccagatccagctagtg
gaagatggatccagtgccacctctccagacaccccagagtctgccactgccaagttcctg
cccaagcagaaagacattcctgagattccaaaatcagtcaaacagatgcccattgccaag
aagttcgtcacccgtcgtagcaccaagtggaacactccaggtcgcctctcctcctccagc
tcccttccctccctcctcatggctccccgggccaccggcctgtccagctctcggtccagg
gaggatgtcagcgagggcagcctgtcttccaagggtgcgctgggggctcccgttgtcccc
atgcccagcggcatccccgccacgcccggcgctccaccccccgtcacccctagcaaggct
gagcctcctgcatcaaagcaggaggaggagtctctgcgtggccaggtgaaggacctagag
gagaagctggagaccctgaaaatgaagcgggcggaggacaaggtcaagctgaaggagctg
gagaaacacaagatccagctggagcagctgcaggagtggaagaccaagatgcaggagcag
caggccgacctgcagaaacaactcaaagaggccaagaaggatgcccgggaggctttggag
gcgaaagaccgctacatggaggagatgtcagacacggcggacgccatcgagatggccacc
ctggacaaggagatggcagaggagcggtctgaaagcctgcaggtggaggtggagtcgctg
aaggagaaggtggaggaactcactatggacctggagatcattaaacacgaggttgaggag
aaagggtctgacggagctgcctctagttaccacgtcaagcagctggaggagcagaacagc
aggctgaaagatgctctggtcaggatgcgtgacctgtcgtcgtctgagaagcaggagcac
gtgaagctgcagaagcagatggagaagaagaatggagagctggagactctgaggacccag
aaggagaaactacaggatgagatgaagcaggctgaggccaccatcgatgagctgaaggag
caggtggatgctgctctcggggcagaggagatggtagagactctaactgagaggaatctg
gacctagaggagaaagtcagagagctgagagagacagtcactgacctggaagcgatcaat
gagatgaatgacgagcttcaggagaacagccgagagacagagatggagctgagagagcag
ttggacctgaacggagccagggtgagagaggcacagaagagagtggaggctgctcaggag
actgtagcagactaccagcagaccatcaacaagtaccgcgagctcaccgccagcctgcag
gatgccaacagggagctgaccagtgttcagaatgccaacgcagagcaggtccagcagcct
cctgctgagctgtttgacttcaagatcaagttcgctgagactaaggcctacgccaaggcc
atagagatggagctgaggaagatggaagtgggccaggccaacagacaggtgtctctcctc
acctccttcatgcccgactccttcctgcgtcacggaggagaccatgactgtatcctggtg
ctgctgctcataccaagactcatctgcaaggctgagttgatcagtaagcaggcccaggag
aagtttgatttgaacagtaaccctgtggagaggactgggacgaaaatgagaggaccacct
ggagaacaactcagcttcgcctcaggactggtctactctctgaccctgctgcaggccacg
ctgcacaaatacgaacaagctctgaactgctgcagtgtggaggtgtataagcgaatgggg
actctctactccgagatgagtgtccatgagcgttccctagacttcttcattgacctgctg
cacaaagaccaactggacgagactgtacacgtggagcctctcaccaaggccatcaagtac
taccagcaactgtacagcatccacctggctgagcagactgaagactgcaccgtgcagctg
gctgaccacatcaagttcatccagagtgcgttggactgtatgagtgctgagctggtgcgt
ctcagggctttcctgcagccgggacaggagggggtggctctgaacatccttctgaaggac
ctggacaccacctgcagtgacatcaaacaattctgtaagaagatcagacgcaggatgcca
gggaccgatgtgccaggggtgccagctgctctggcctttggagctccggtgtcggagacg
ctgacggactgcaggcgtcagctgacgcgggtggttgcagtactacaggaggtggcggcg
gcgggggctcagatggtcgcccctctcggggagcaggaggggctcaacgctctaaaactg
gatgacgtggccttcaaggctgttgaacaggtgtatgggtcccaaggtctaaacccccat
gagtgtctgcgtcagtcctgcagctctgtcatctccaccatgaacaagatggccactgcc
atgcaggagggagagtatgatgctgagagaccacagggaaaggctcccccagtagaggct
cgtgcggcagccctcagggcagagatcactgatgcagagggcctgggtgtcaaactggaa
gacagagacaccgtcatcaaggagctcaagaagtcactaaagatcaagggagaggagttg
agtgaggcccacgtccgtctcagtctcctggagaagaagctggacacgtcaactaaagac
gcagacgaacgtgtggagaagatccagaccaaactggatgagaccctggccctgctcaag
aagaaggagaaggagtttgaggagaccatggatgccctgcaggcagacattgaccagctg
gaggcagagaaggcggaactgaagcagcgtctctccagccaatcaaagatgaccatcgag
ggcctcagggccccgcctgcctcgggcatcgcctccatcgtcacgggatctgccggagcc
ggtgttgtcccaggagcagggggtctgtctgggccgatgcaggtggtggactcccctctc
ctccgtcagcaggtggcggctcagagactgggcatcaaacacctgaagaacgagaacaac
agactcaaggcagagaagatgagagcccagctagcctctctccctcccctccacgtcccc
aagctacacctgagagaggccacctcttcctcctctccccctactgaggggcctctccac
ggggctctctacaggaagactgaccagctcttggggaccctgctcaagatgaccgccacc
gttaaagtggtcgacatcaccgggaagacaccagtgagtgctagtgctcagctcttggac
cagacagctcggctgcagagcctgagtgacgccctggacaaactgaagggtgaagtgtca
gagcatgtggtttctcagcagcctggggcaaaggtctcctctgactttgccacctttccc
atctcgtctttcgtcaaggcgaaggaggagaagcagggaggcacggttttcgtagggcgc
gttgccatcccgtgtgccaagggccaggagcaggtgcaccgtcttgtcctctcacagcaa
cacctgcagcaagtgcaccgcctcctcttaacctaa
DBGET
integrated database retrieval system