Coregonus clupeaformis (lake whitefish): 121554864
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Entry
121554864 CDS
T08357
Name
(RefSeq) 60 kDa heat shock protein, mitochondrial isoform X1
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121554864
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121554864
03110 Chaperones and folding catalysts [BR:
cclu03110
]
121554864
03029 Mitochondrial biogenesis [BR:
cclu03029
]
121554864
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cclu04147
]
121554864
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
121554864
Messenger RNA biogenesis [BR:
cclu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
121554864
Chaperones and folding catalysts [BR:
cclu03110
]
Heat shock proteins
HSP60 / Chaperonin
121554864
Mitochondrial biogenesis [BR:
cclu03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
121554864
Exosome [BR:
cclu04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
121554864
Exosomal proteins of other body fluids (saliva and urine)
121554864
Exosomal proteins of breast cancer cells
121554864
Exosomal proteins of colorectal cancer cells
121554864
Exosomal proteins of bladder cancer cells
121554864
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Gag_p15
ABC_tran_CTD
Motif
Other DBs
NCBI-GeneID:
121554864
NCBI-ProteinID:
XP_041724511
LinkDB
All DBs
Position
40:complement(19481707..19488812)
Genome browser
AA seq
622 aa
AA seq
DB search
MQKAMCSAVSLKFDCTTPLAVLLYAISFRLLQTTKLCHPKIIQTTKMLRLPTVMRQMRPV
CRALAPHLTRAYAKDVKFGADARAMMLKGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVT
KDGVTVAKAIDLKCKYQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFDTISKG
ANPVEIRRGVMLAVETVIAELKRMSKPVTTPEEIAQVATISANGDVEIGTIISNAMKKVG
RKGVITVKDGKTLHDELEIIEGLKFDRGYISPYFINSAKGQKCEFQDAYVLLSEKKISTV
QSIVPALELANQHRKPLVIVAEDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKAQLH
DIAVATGGTVFGDEAVGIALEDIQAHDFGQVGEVSVTKDDTMLLKGKGDTAAIEKRQAQI
AEQLENTTSDYEKEKLSERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEE
GIVPGGGCALLRSIPALDALVPINADQKIGIDIIRRALRVPAMTIAKNAGVEGSLVVEKI
LQAAVEIGYDAMEGEYVNMVEKGIIDPTKVVRTALMDAAGVASLLSTAECVVTELPKDEK
EGGTPGGMGGMGGMGGMGGGMF
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaggccatgtgcagcgctgtctctctgaagttcgattgcaccacacctctggcc
gttcttctctacgctatatcattccgtcttcttcagacgaccaaattgtgccaccctaaa
atcattcaaacaacaaagatgctgcgtctacccacagtgatgagacagatgaggccagtc
tgcagggccctggccccccacctcacccgagcctatgccaaggacgtcaagtttggagcc
gatgctcgggccatgatgctgaagggagtggatctgctggctgatgctgtcgccgtcacc
atgggacccaagggtcgtacagtcatcattgagcagagctggggcagccccaaggtgacc
aaggacggcgtcactgtagccaaggccatcgacctgaagtgcaagtaccagaacatcggt
gccaagctggtccaggatgtggccaacaatactaacgaggaagcaggagatggcaccacc
accgccactgtgctggccagagccatcgccaaggagggctttgacaccatcagtaaagga
gctaaccctgtggagatccgccgtggcgtcatgctggctgtggagaccgtcattgctgag
ctgaagaggatgtctaagccagtcaccacacctgaggagattgcccaggtggccaccatc
tctgctaatggagacgtggagatcggcaccatcatctccaatgccatgaagaaagtgggc
cgcaagggagtcatcactgtcaaggatggcaaaaccctgcatgatgagctggagatcatt
gaggggctgaagttcgaccgaggatacatctccccttacttcatcaactcagccaaaggc
cagaagtgtgagttccaggatgcctatgtgttgctgagtgagaagaagatctctactgtc
cagagcatcgtccctgccctggaattggccaaccagcaccgcaaacctctggtcatcgtg
gccgaggacgtggacggagaggccctcagcaccctggttctcaacaggctgaaggtggga
ctacaggtggtggcagtcaaggccccaggctttggagacaacaggaaggcccagctgcac
gacatcgccgtcgccaccggtggcactgtgtttggtgacgaggcggtgggcattgccctg
gaggacatccaggcccatgactttggccaggtgggcgaggtgtcagtgaccaaggacgac
accatgctgctgaagggtaagggagacacggcggccatcgagaagaggcaggctcagatc
gctgagcagctggagaacaccaccagcgactacgagaaggagaagctcagcgagaggctg
gccaagctgtctgacggagtggctgtgctcaaggtgggaggaacgagtgatgtggaggtg
aatgagaagaaggaccgtgtgaccgacgccctgaatgccaccagggccgctgtggaggag
ggcatcgtgcccgggggtggctgtgccctgctgcgctcaatccctgcactagatgccctt
gtgcccatcaacgctgaccagaagattggaattgacatcatcagacgagccctgcgtgtg
ccagccatgacaattgctaagaacgctggtgtggagggctctctagtggtagagaagatc
cttcaggccgcggtggagatcggctatgatgccatggagggagagtacgtcaacatggta
gagaagggtatcatcgaccccaccaaggtggtgaggactgcactaatggatgctgcaggt
gttgcatccctgctctccaccgctgagtgtgtggtcacagagctgcccaaggatgagaaa
gagggtggcacgccaggaggcatgggtggaatgggaggcatgggaggaatgggtggtggc
atgttctaa
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