Coregonus clupeaformis (lake whitefish): 121554908 Help Entry 121554908         CDS       T08357                                  Name (RefSeq) thrombospondin-2-like isoform X1   KO K04659   thrombospondin 2/3/4/5 Organism cclu  Coregonus clupeaformis (lake whitefish) Pathway cclu04145   Phagosome cclu04510   Focal adhesion cclu04512   ECM-receptor interaction cclu04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:cclu00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     121554908  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     121554908   09144 Cellular community - eukaryotes    04510 Focal adhesion     121554908   09142 Cell motility    04820 Cytoskeleton in muscle cells     121554908  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:cclu04131]     121554908   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:cclu04147]     121554908    00536 Glycosaminoglycan binding proteins [BR:cclu00536]     121554908 Membrane trafficking [BR:cclu04131]  Endocytosis   Phagocytosis    Opsonins     121554908 Exosome [BR:cclu04147]  Exosomal proteins   Exosomal proteins of other body fluids (saliva and urine)    121554908   Exosomal proteins of colorectal cancer cells    121554908   Exosomal proteins of bladder cancer cells    121554908 Glycosaminoglycan binding proteins [BR:cclu00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    121554908 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC EGF_3 TSP1_CFP_C TSP1_ADAMTS TSP1_CCN cEGF Laminin_G_3 Laminin_G_2 Motif Other DBs NCBI-GeneID:  121554908 NCBI-ProteinID:  XP_041724581 LinkDB All DBs Position 1:complement(29011215..29058131) Genome browser AA seq 1190 aa AA seqDB search MILRSLNLLPIFLLCSSALPQDGEVTLDDDTTFDLFDISGITRKTMGAKQFRGQDTDNPA YRFIRFDHLPSVSAPVLKQMLQQIQNNEGFVFVASMRQDRSSRGTLIALEGANGQRQFEI VSNGRANTLDLVYWVDGSQNVVSFEDVDLSDSQWKNITLHVHGENANLFVGCSLIDSFIL DEPFYEHLQAEGSRMFVAKGSIRENHFRGLLQNVRFLFDTSMDDILRNKGCEVTKPDEAN TVVSESTDMVDVSPSTAITTNFIGQKTENLGADMCERSCEELSTMFQELKGLRVVVGNLI DGLQKVTEENTVMKDALGKMKNSKEKHMCWQDGRLFEDKEDWVVDSCTTCTCQDSKIVCH QITCPPVACASPSFIDGECCTVCLPKDSEDGWSPWSEWTECTVTCGTGTQQRGRSCDATS NPCSGPSIQTRKCSLGKCDSRVRQDGGWSLWSPWSSCSVTCGEGQITRIRHCNAPTPQLG GKDCEGQGRETQRCEAKPCPIDGGWGPWSPWAICSATCGGGVKGRTRVCNSPEPQYRGKE CPGETNDSNACNKQDCPIDGCLSNPCFGGVDCNSASDGSWECGPCPLGFRGNGTHCEDIN ECDMVSDVCFKAGGASRCVNTDPGFHCLACPPRYKGKQPFGVGVEAASKNKQVCEPENPC KDKTHSCHRSAECIYLSHFSDPMYKCECRIGYAGDGFICGEDSDLDGWPNQNLVCGANAS YHCRKDNCPNLPNSGQEDFDNDGQGDACDKDDDNDGIVDERDNCPLLYNPRQFDFDKDDV GDRCDNCPYEHNPAQIDTDHNGEGDACAVDIDGDEIPNEQDNCPYVYNNDQKDTDMDRVG DQCDNCPLLHNPDQADTDNDLVGDQCDNNQDIDEDGHQNNLDNCPYVANSNQADHDKDGK GDACDFDDDNDGIPDDRDNCRLTPNKDQLDSDGDGRGDACKDDFDNDNIPDILDVCPENN AISVTNFRKFQMVHLDPKGTTQIDPNWVVRHQGKELVQTVNSDPGIAVGFDEFNAVDFSG TFYVNTDRDDDYAGFVFGYQSSGRFYVVMWKQITQTYWEDKPSKAFGISGVSLKVVNSTT GTGENLRNALWHTGNTKDQVRTLWHDPKNIGWKDYTAYRWHLIHRPKTGFIRVVVYEGKQ ILADSGPVYDKTFAGGRLGLFVFSQELVFFSDLKYECRDELVFPTVLSIR NT seq 3573 nt NT seq  +upstreamnt  +downstreamnt atgatactcagaagtctcaacttgctgccgatttttttactttgctcttcagcactacct caagatggcgaggtcacgttggatgacgacacgacgtttgacctgtttgatattagcgga atcacacgcaagacaatgggcgccaagcaattccgcggccaagacactgacaatccggct taccgcttcatccgcttcgaccatttgccctcagtgagcgcgcccgtgctcaaacagatg cttcagcaaatccagaacaacgagggcttcgtgtttgtggccagcatgcgccaggaccgc agctcgcggggaaccctcatcgccttggaaggcgccaacggccagcggcagtttgaaata gtctccaacggccgcgccaacacgctggaccttgtctactgggtggacggctcccaaaat gtcgtctccttcgaggatgttgacctgtccgactcgcagtggaagaatatcacacttcat gttcatggcgaaaatgcaaatctgtttgtgggctgcagtctcatcgacagcttcatcttg gatgagccgttctatgagcacctgcaggcggaggggagccgaatgttcgtagccaaggga tccattcgtgaaaaccacttcagggggttactgcagaacgttcgcttcttgttcgacaca tccatggatgacattcttaggaacaagggctgtgaagtcactaagccagatgaggccaac actgtggtgagtgagagcacagacatggtggatgtgagtccttccacagccatcaccact aacttcatcggccagaagacagagaatctgggagcagatatgtgtgaacgatcctgtgag gaactcagcaccatgtttcaggagctcaaaggactgcgtgttgtagtggggaacctcatt gacggcctgcagaaagtgaccgaggagaacacagtgatgaaggatgctctggggaagatg aagaactccaaggagaaacacatgtgctggcaggacggacggttgtttgaagataaggag gactgggtggtggacagctgcaccacatgtacctgccaggactcaaagattgtgtgtcac caaatcacctgtcctcctgtggcctgtgctagcccctccttcatcgacggagagtgttgc actgtgtgtctgcctaaggacagtgaggatggctggtccccctggtcagagtggacagag tgtactgtcacctgtgggacaggtactcaacagagaggacgctcatgtgatgccaccagt aacccctgctctggaccatccatccagaccaggaaatgcagcttaggaaaatgtgacagc cgagttcgtcaggacggtgggtggagcctgtggtctccatggtcatcatgttcggtgacg tgtggcgagggccagatcaccaggatacgccactgcaacgcccccacaccacaactgggg ggcaaagactgtgagggccaggggagagagacacagcgctgtgaggcaaagccctgtccc attgatggtggttggggaccgtggtcgccatgggcgatatgctcagcaacctgtgggggc ggagttaagggtcggacccgtgtctgtaacagccctgaaccccagtacagaggcaaggag tgccccggggagaccaacgacagtaacgcctgcaacaaacaggactgccctatcgatggc tgtctgtctaacccatgctttggaggagtggactgtaacagcgcctctgacggatcctgg gagtgtggaccctgcccccttggtttccgtggcaacggcacccactgtgaagatatcaac gagtgtgacatggtctcagatgtctgctttaaagctggtggagcatcgcgttgcgtcaac acagacccagggttccactgtctggcctgcccaccccgctacaagggaaagcagcccttc ggtgtgggggtggaggccgccagcaagaacaaacaggtctgcgagccagagaacccctgc aaagacaagacccacagctgtcaccgttcagctgagtgtatctaccttagccacttcagt gaccccatgtataagtgtgaatgtaggataggctatgccggggatggcttcatctgtgga gaggactctgacctagacggatggcccaatcagaacctggtgtgtggcgccaacgccagc tatcactgcaggaaggataactgccccaacctgcctaactctggacaagaggactttgac aacgacggccagggagatgcttgtgacaaggatgatgacaacgatggaatcgtggatgag agagacaactgtcctctcctgtacaaccccagacagtttgactttgataaagatgatgtg ggtgaccgttgtgataactgcccctacgaacacaaccctgcccagattgacaccgaccac aacggcgaaggagacgcatgcgctgtcgacattgatggagatgaaatcccaaacgagcaa gacaactgtccgtacgtgtacaacaatgaccagaaggacactgacatggatagagtgggt gaccagtgtgacaactgtcctctgctacacaaccctgaccaggctgacacagacaatgac cttgtaggagaccagtgtgacaacaaccaggacattgatgaagacggtcaccagaacaac ctggacaactgtccttacgtggccaactccaatcaggcagaccacgataaggacggcaaa ggggacgcctgtgacttcgacgatgacaatgacggtatccctgacgatagggacaactgt agattgacgcccaacaaagatcaactggactctgacggcgacggtagaggcgacgcctgc aaagacgactttgacaacgacaacatcccggacatccttgacgtgtgtcctgagaacaac gccatcagcgtcacaaacttccggaagtttcagatggtgcacctggaccccaaaggaacc acgcagatcgaccccaactgggtggttaggcatcagggcaaggagctggtgcagaccgtc aactctgacccaggcatcgctgttggctttgatgagttcaacgccgtggacttcagtggt acgttctatgtgaacacggaccgggatgacgactacgctggtttcgtgttcggctaccag tcgagcggccgcttctacgtggtgatgtggaagcagatcactcagacctactgggaagac aaaccctccaaggccttcggtatctctggtgtctccctgaaggtggtcaattcaaccaca ggcacaggggagaacctgagaaacgccctgtggcacacaggcaacactaaagatcaggtg cgcactctttggcacgacccaaaaaacattggctggaaggattacacagcctacaggtgg cacctcatccacagacccaagactggtttcatcagggttgtggtttatgaagggaaacag atcttggcagactcaggaccagtgtacgacaagacgtttgctggaggacggttaggcctg tttgtgttctcccaggaactggtcttcttctccgatctcaaatacgagtgcagagatgag ctggtgtttccaactgtgttgtccatcagataa

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