Coregonus clupeaformis (lake whitefish): 121554939
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Entry
121554939 CDS
T08357
Name
(RefSeq) transcription factor Sox-21-B-like
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121554939
Transcription factors [BR:
cclu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121554939
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GFIT
Motif
Pfam:
HMG_box
HMG_box_2
SOXp
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
121554939
NCBI-ProteinID:
XP_041724578
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All DBs
Position
40:complement(1815916..1818280)
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AA seq
237 aa
AA seq
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MSKPMDHVKRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDE
AKRLRAMHMKEHPDYKYRPRRKPKTLMKKDKFAFQVPYNLGEHDALKVSCLSHGALSEHL
LGNPEKAAAARVFFSPSMSTNPYSFFELGSKMSELSSPSFPYPSLGYPCGTAFSGTGGVG
GTHTHTHSHPAPGNPGYMIPCNCTGWPSAGLQPPLAYILLPGMGKPQLDYPAYAAAL
NT seq
714 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaccaatggatcacgtaaaacgcccgatgaatgccttcatggtttggtccaga
gcgcagaggagaaaaatggcccaggagaacccaaaaatgcacaactccgaaatcagcaag
agattgggagcggagtggaaacttctcaccgagtcagagaaaaggccattcattgacgaa
gctaaacgactaagagccatgcacatgaaggaacaccctgactataaatacagacctagg
cgaaagccaaagactctgatgaaaaaagacaagtttgccttccaagtgccctacaatctt
ggggagcacgacgcgcttaaagttagctgtctgtctcatggagcactttccgagcaccta
ttagggaaccccgaaaaggcggcagcggcgagagtcttcttcagcccgtccatgtccacg
aacccctattcgttttttgagctgggatcgaagatgtcagagctttcctcgccctcgttt
ccttacccatctctggggtacccttgtggcacggctttctctggaactggcggtgtcggt
ggaacacacacccacactcactctcatccagccccgggcaacccaggctacatgatcccc
tgtaactgtacgggctggccctctgcgggtctccagccaccgttggcctacatcctattg
cccgggatgggcaaacctcaacttgactaccctgcatatgcagcggcattatga
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