Coregonus clupeaformis (lake whitefish): 121554940
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Entry
121554940 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: pseudouridylate synthase 7 homolog
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cclu03016
]
121554940
Enzymes [BR:
cclu01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
121554940
Transfer RNA biogenesis [BR:
cclu03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
121554940
Prokaryotic type
121554940
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
NIL
Motif
Other DBs
NCBI-GeneID:
121554940
NCBI-ProteinID:
XP_045068078
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All DBs
Position
40:complement(32523029..32524715)
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AA seq
408 aa
AA seq
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MEHTLYIVLYKENKDTMEAINVLSKFLRMRPNVFSYMGTKDKRAITVQEIAVLKVTAERL
SHLNKCLNNFKLGNLCYKKHPLKLGELQGNHFTVVIRNITGTEEQVQQAMTSLRETGFIN
YYGMQRFGTTAVPKHQVGKAILQDNWNXVIDLILKTRPGAEKGYLVKCREEWAQSQDPEA
ALKKLSVKHCVEGQLLRGLSMYVKKNIITAFAMIPRNNRLMYIHSYQSFMWNTMVSRRIE
AFGVKAVEGDLVLREGTAFVLSAAEAETHSIQDVMMPLPGFEVIYPTHHVGKGYREMRSA
DNLDIDNMRHRVRDYSLAGAYRRILIKPSDVSWEVINYEDPRVSLVHTDVEKLEDQPPPV
FNKEGKYRALRMEFSLPPSTYATMAIREVLKMDTSIKNQTQLNTTWLN
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggaacatacattatacatcgtcctctacaaggagaacaaagacaccatggaagccatc
aacgtgctctcgaaattcctcaggatgaggcccaatgtgttctcctacatggggaccaag
gacaagagagccatcactgtgcaggagattgcagttctcaaggtcacagcagaaagactg
tcacacctcaacaagtgcctcaataacttcaaactgggaaacttatgctacaagaaacac
cctctgaaactgggagaactacagggcaatcacttcactgtggtcatcaggaacatcaca
gggacagaggagcaggtccagcaggccatgacctcccttagagagacaggcttcatcaac
tactacggcatgcagcgctttggcaccaccgccgtgcccaaacaccaagttggcaaggcc
atcttgcaagacaactggaattaagtgatagatctgatcctgaagactcgccctggagcg
gagaaaggttacctggtgaagtgccgtgaggagtgggcccagtcccaggacccagaagca
gcgctgaagaagctgtctgttaaacactgtgtggagggacagctgctccgaggtctctcc
atgtacgtcaagaagaacatcatcactgcctttgcaatgatccctcgtaacaaccggctg
atgtacatccacagctaccagagctttatgtggaacaccatggtcagcagacgcattgag
gccttcggagtgaaggctgtggagggagacctcgttctcagggaaggcactgcattcgtg
ctgtccgcagccgaggccgagacccactctatccaagacgtgatgatgcccctaccaggg
tttgaagtcatctaccccactcaccatgtgggtaagggctacagggagatgcgtagtgca
gataacctggacattgacaacatgaggcacagggtgagggactactctctggccggagcc
taccgacgtatcctcatcaaacccagtgacgtcagctgggaggtgattaactatgaggac
cctcgtgtctccctggtccacactgatgtggagaaactagaggaccaacctcccccagtc
ttcaacaaagaggggaagtacagggctctgaggatggagttctccctgcctccctctacc
tacgccaccatggccatcagagaggtgctcaagatggacaccagcatcaagaaccagact
cagctcaacaccacctggctcaactaa
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