Coregonus clupeaformis (lake whitefish): 121554960
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Entry
121554960 CDS
T08357
Name
(RefSeq) CLIP-associating protein 1 isoform X1
KO
K16578
CLIP-associating protein 1/2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121554960
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
cclu04812
]
121554960
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
121554960
Cytoskeleton proteins [BR:
cclu04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Cytoplasmic linker proteins (CLIPs)
CLIP-associating proteins
121554960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLASP_N
CEP104-like_TOG
HEAT_EF3_N
XMAP215_CLASP_TOG
HEAT
HEAT_EZ
TOR1L1_N
Cnd1
Sec7-like_HUS
HEAT_DAAF5
ParcG
MMS19_C
TAN
AFF4_CHD
Motif
Other DBs
NCBI-GeneID:
121554960
NCBI-ProteinID:
XP_041724613
LinkDB
All DBs
Position
40:complement(17346267..17457187)
Genome browser
AA seq
1643 aa
AA seq
DB search
MEVNMDYCLAQVVQKDLGRKVQVGQELIDYILDKDRSQDLEQDQTGLDRMVDSIATTWVN
CSNFKVALLGIDLLSALVTRLQDRFRNHVGTVLPSLIDRLGDSKDQVREQDQILLLKIME
QAASPQYVWDRMLGGFKHKNNRTREGVCLCLISTLNMYGAQGLTLSKIVPHICNLLGDPT
SQVRDGAMGCLVEIYRHVGERVRMDLSKKGLPQSRLNVIFSRFDEVQRSGNMIPSSGSDK
NFEDEDSVDGGRSSSSVSSSKAPPSGRRTVAPASVRRPSSATGPGKISAKDAAAGAVDEE
DFIKAFEEVPSIQIHSNREMEDNLSKVREVLSDDKNDWEHRVIALKKVRSLLLAGAMEYD
SFPQQLRLLEAPLKLSAKDLRSQVVREACITLGYLSTLMGNKFDHCAETLMPTLLNLVPN
SAKVMATSGMAAIRLILRHTHYSRLIPIITSNCLSKSVAVRRRSYEFLELLLLEWQTHTL
ERHVTVLTETIKKGIHDADSEARSVARKCYWGFHGHYSREAEHLFQALESSYQKALQSHL
KSSDSIVSLPQSDRSSSSSQESLNRPLSVKSVIGGSITRGKMVSSRVNSNPGGSLQRSRS
DIDVNAAASAKSRLVIVPSASPFSSAAALPPGSYASLDGTPGKIHTGRVRTRRTSAGSAV
GASATVTDSRGRSRAKMVSQSQRSRSANPTGGGKARTSSNQTGSRSSSPGKLLGHSSGYG
RISRPPSASSTPVDKRSKVPRSQGCSRDSSPSRLGLARSRIPRPSMSQGCSRETSRESSR
DTSPARAFKPLASRRTSRSTSALSTADPHGQSDRFGLIHQDRISASVNAMKVLNTGTEVE
AAVADALLLGDSRNKRKPIRRRYESPGIYSDDDANSDASSACSERSYGSRNGGIPHYLRQ
TEDVAEVLNHCASSNWSERKEGLLGLQNLLKNQRILSRVELKRLCEIFSRMFADPHSKRV
FSMFLETLLDFILVHKEDLQDWLFVLLTQLLKKMGADLLGSVQAKVQKALDITRESFPFD
QQFNILMRFIVDQTQTPNLKVKVAILKYIESLAKQMDPTDFVNSSETRLAVSRIITWTTE
PKSSDVRKTLHNWVVEELSGRSTTAALLSQQAGEGQLEEWCKQAAQVVLISLFELNTPEF
TMLLGALPKTFQDGATKLLQNHLKNSSNTSSVSSPSNAIGRTTSRHTPSRTSPLTSPTNC
SHGGLSPSRLWGGCWSGDGLSKHPPPPHPPPPHSTPAGPALRVLRRAYSPSMLEYDTENM
NSDEIYSSLRGVTEAIQSFSYRSQEDLNELRGKRDDAAGREGVAPSPGSDARLGLDVVEG
GRTALDNKTSLLNTPSPRSFSGPRARDFAPYGYGDTITSSYDKSALKEAVFDDDVEQFRD
CRRQDGSGENKMVLPKGFAPGSQDHSDLVADLLKELSNHNERVEERKGALVELLKITRED
SPAVWDEHFKTILLLLLETLGDKDHTIRALALRVLKEILRNQPARFKNYAELTIMKTLEA
HKDSHKEVVRAAEESASTLAGSIHPEQCIKVLCPIVQTADYPINLAAIKMQTKVIERITK
ESLHQLLPDIIPGLLQGYDNTESSVRKASVFCLVAIYSVIGEELKPHLQLLTGSKMKLLN
LYIKRAQTTNSNSSSSSDVSSHS
NT seq
4932 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcaatatggattactgtctggcccaggtggtgcagaaagacctggggaggaag
gtgcaggtgggacaggagctcatagattacatcctggataaggacaggtcccaggatctg
gagcaagaccagacaggtctggacaggatggtggacagcatcgctacaacctgggtcaac
tgctccaacttcaaggtggctttgctaggaatagaccttttatctgccctagtgacaagg
ctacaggaccgatttaggaaccacgtgggaacagtactgcccagtctgatagatcgtctg
ggtgattccaaagaccaagtcagagaacaagatcaaatcctgctgctgaagatcatggag
caggctgcctccccacagtacgtgtgggatagaatgctgggaggcttcaaacacaagaac
aacaggaccagagagggagtgtgcctttgcctcatctcaacgctcaacatgtacggagct
caaggcttaaccctcagtaaaatagtccctcacatatgtaatctactaggtgatcccacc
agtcaggtgagagacggagctatgggctgcctggtggagatctacagacacgtgggggag
agggtgaggatggacctcagcaagaagggcctaccacagtcacggttgaatgtaattttc
agtagatttgatgaagtccaaagatctgggaacatgatcccatcatcaggttcagataag
aactttgaggatgaggactctgtggatgggggcaggtcctcctcctccgtatcgtcctcc
aaggcgccccccagtgggaggaggactgtagctccagcttctgtccgcaggcccagctct
gccaccggacccggcaagatctctgctaaagatgctgctgcaggagcagtagatgaggag
gacttcatcaaggcttttgaagaggttccttctatccagatccattccaacagagagatg
gaggacaacctctccaaggtccgggaggttctgtctgacgacaaaaacgactgggagcac
cgagtcatcgctctgaagaaggtgcgttctctgctcctggctggagcgatggagtatgat
agtttccctcagcagctccgtctactggaggcccctctgaagctttcggctaaagacctg
aggtctcaggtggtacgagaggcctgcatcacactgggatacctgtccacgttaatgggc
aacaagtttgaccactgtgcagagacgctaatgcccacactgctcaacctggtgcccaac
agtgccaaggtcatggccacgtctgggatggcagccatacggctcatcctcaggcacaca
cactactcacgtctcatccccatcatcactagtaactgcctgtccaaatcagtggccgtc
agaaggcgcagttatgagttcttagagttgttattactagagtggcagacgcacacactg
gagaggcacgtgactgttctgacggagaccatcaagaaagggatacatgatgccgactca
gaggccagatccgtggccagaaagtgttattggggtttccatggccactacagccgggag
gcagagcatctgttccaggccctggagtcgagctatcagaaggctctccagtctcacctg
aaaagttctgacagcattgtgtccctcccccaatcagaccgctcatcctcctcctctcag
gagagcctcaaccggcccctgtctgtcaagagtgtcataggtggcagcataacaaggggt
aagatggtgagttccagggtgaactctaacccaggcggttctctccagcgttcccgtagt
gacatcgatgtgaatgccgcggccagcgccaaatcccgtctggttatcgtgccctccgct
tctcccttcagctcagccgctgctctgcccccaggctcctacgcctctctagatggcaca
cctggtaaaattcatactggtcgtgtgcgtacgaggaggacaagcgccggcagtgccgtc
ggagccagcgctactgtgactgacagcagggggcgcagccgagccaaaatggtatcccag
tcccagcgatccagatctgctaaccccactggcggtggtaaggcccggacttcatccaat
cagactggcagtcgctccagttcccctgggaagctgctgggccactcgtctgggtacggg
aggatcagcaggcccccctcagcctccagcacccctgtagacaagaggagcaaggtcccc
cgcagccagggctgcagtagagattcctctcccagccgactgggactagcgaggagccgt
atcccccggcccagcatgagtcagggctgcagcagggaaacctctagggaaagcagcaga
gacaccagccctgctcgggccttcaagcctcttgcctcccgacgtacttcccgctctacc
agcgccctatctacggctgacccccacggccagtcagatcggtttggtttgatccaccag
gaccgcatctctgcctcagtaaacgccatgaaagtcctcaacactggcactgaggtcgag
gctgctgtggctgatgcactgctattaggagactccagaaataagaggaagcctataagg
cggcggtatgagtctccaggtatctattctgacgacgatgctaacagcgatgcgtccagc
gcttgctcggagcgctcgtacgggtccaggaacggaggtatccctcactacctgcgtcaa
acggaggatgtggcggaggtgctaaaccactgtgccagctcaaactggtcagagaggaag
gaggggctgctgggtctgcagaatctactcaagaaccaaagaatactcagccgagtggag
ctgaagagactatgtgagatcttcagcaggatgtttgcagatccacacagcaagagagtg
tttagtatgtttctggagactctgttggactttatcttggtgcacaaagaagacctgcag
gactggctgtttgtcctgctcacccagctactgaagaagatgggagctgacctgctgggg
tctgtccaggccaaggtccagaaggctctggacatcaccagggagtcttttccgtttgat
cagcagttcaacatcctgatgaggttcattgttgaccagacacagacacccaacctcaag
gtgaaggtggccatcctgaagtacatagagtcactggcaaaacagatggatcctacagac
tttgtcaactccagtgaaacccgactggctgtatctcgcatcattacctggaccacagag
cccaagagctccgacgtcaggaagacccttcataactgggtggtggaggagctatcaggc
aggtccactactgcagccttactgtcccagcaggccggggaggggcaactggaagaatgg
tgtaagcaggcggcccaggttgtgctgatctctctgtttgagctgaacaccccagagttc
accatgctgctgggagccctgcccaagaccttccaggacggggccaccaagctgctccag
aatcacctgaagaactccagcaacaccagcagcgtgagttctcccagcaacgctattggg
cggaccacaagccgccacacccctagccggaccagccccctcacttccccgaccaactgc
tcccatggggggctatctcccagtcggttgtggggtgggtgttggagtggcgatgggcta
tctaagcacccccctccccctcatcctcctccgcctcactccacccccgcaggccccgcc
ctcagggtcctccgcagagcgtactctcccagtatgttggagtatgacacagagaacatg
aactctgatgagatctacagctccctgcgaggggtcacagaggccatccagagcttcagc
taccgcagccaggaggacctcaacgagctgagagggaagagggacgatgctgcgggacgg
gaaggtgttgcgccctccccaggctctgatgcccgtctggggttggatgtggtggagggt
gggcggacggccctagataacaagacctcccttctcaacaccccgtctccccgctccttc
tctgggccgcgagccagagattttgccccctacggatacggagacaccatcacctcatcc
tacgacaagagtgccctgaaggaggccgtgtttgatgacgacgtggagcagtttagagac
tgccgtcggcaggatggcagtggggaaaacaagatggtgctgcctaagggatttgctcct
ggttcccaggaccactcggacctggttgcagacctgctgaaggaactgtctaatcacaat
gaacgcgtggaggagcgtaagggggcgttggtggagctcctgaagatcacccgggaggac
agcccggccgtgtgggacgaacacttcaagaccatcctcctcctgctcctggagacactg
ggggataaagaccacacaatccgtgccctggcactgagggtactgaaggagatactgcgg
aaccagccggcccgcttcaagaactacgctgaactcaccatcatgaagaccctggaggca
cacaaagactcccacaaggaggtggtaagagcagcggaggagtctgcctccaccctggcc
ggctccatccacccagagcagtgtatcaaggtgctgtgtcccatcgtccagacggctgac
taccccatcaacctggctgccatcaagatgcagaccaaagtgatagaacgcatcaccaag
gagtccctgcaccagctgctgcctgacatcataccaggactactgcagggttatgacaac
acagagagtagtgttcgcaaggccagcgtgttctgtctggtggccatctactccgtgatt
ggagaagagctcaaaccacacctgcagctactcacgggcagcaagatgaagctgctgaac
ttgtacatcaagagggctcagacaaccaacagcaacagcagcagttcctcggatgtctcc
tcacacagctag
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