Coregonus clupeaformis (lake whitefish): 121555002
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Entry
121555002 CDS
T08357
Symbol
smarcal1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 isoform X1
KO
K14440
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121555002 (smarcal1)
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121555002 (smarcal1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HARP
SNF2-rel_dom
Helicase_C
ResIII
Flavi_DEAD
DEAD
Motif
Other DBs
NCBI-GeneID:
121555002
NCBI-ProteinID:
XP_041724688
LinkDB
All DBs
Position
Unknown
AA seq
975 aa
AA seq
DB search
MSSSLTAEQQRKIEENRQRALAIRAQRHAAQSNNQTPISVLNNPASGPQQGNQTPISVLN
NPASGPQQGTSAHSGPAVPRGTPSNSTPRTGPTHNTGPQNYVPQGQDRRPNQLFSRPRDK
SGQNSPVSNTATKQVKVIDPLPLPKGQHSLKGLDVFTRGSPPAFKPPLPKTAVLPGPSPS
STSATGSFCVSTPHPKTSSPGLSSSSGSATGSFYKQGTKHGATPPSVQSAVRRQPSSSST
DISNSVPAKTPAVTVRGKCVSHSEERFRVEVSYHAELIAVFKNIPSRNYDPATKMWNFSL
EDHRQLMEEAGSISCVCLKPLEGMGGIAVAAAASSSRSRDAPAPAALLKLCSGWQRPGAT
VQGHATLVSRSRFEVDVGYHVDVIAAFKQMPSKNYDMKTRKWSFLLEDYKRLMDALGTIP
SVEIEPLPRAVVQVFSALFEGSQTWPSEVPEADLSSIDPSLTRSLMPFQRDGVNFAVSKD
GRLLLADDMGLGKTVQAICIAAYYRKEWPLLVVAPSSVRFTWAEAFRRWLPSVQPDSINV
IVKGKDNLRGGLVNIISYDLLSRMDKQQAANPFNVLIMDESHFLKNMKTARFKSALPLLK
VAKRVILLSGTPAMSRPSELYSQILAVKPSLFPRFHDFGTRYCNARQLPWGWDYSGSSNL
GELKLVLEKSLMLRRLKSEVLSQLPAKQRKVVTVTTDGINTRTKAALSAAAKELAKGQHN
NNKIKEALLVFFNHTAEAKIKAIMEYIMDLLECGREKFLVFAHHKLVLDSITKGLGEKGI
DYIRIDGSTPSSDRQQLCDRFQFTDQSCVAVLSITAANMGLTLHSAALVVFAELFWNPGI
MIQAEDRVHRIGQTSNVDIHYLVAKGTADDYLWPMIQEKMNVLEQVGLSESNLLEKAESA
RFHSKDPQQRRITEMFQRSFTEEEDDADMDEALLLEAVDAWDDPSNHPGSSFCHTGSDVE
ESPSKKRRIEDYFGR
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgtctagctctttgacggcagagcagcagcggaagatcgaggagaacagacagagagct
ttagcgattagagcgcagagacatgctgctcagtcaaacaaccagacgccgatatcagtc
ctcaacaacccagccagtggccctcagcaaggcaaccagacgccaatatcagtcctcaac
aacccagccagtggccctcagcaaggcactagcgctcactctggtccagctgttccaaga
gggacaccttctaattcaactccccgaacaggaccaacgcataatactgggcctcagaat
tatgtcccacagggtcaagacaggagacctaaccagttgttttctaggccaagggacaag
tctggacagaattcaccagtctccaatactgccactaaacaggtgaaagtaatagaccca
ctacctctcccaaagggacaacattccttgaaagggttagatgtgtttaccagaggaagc
ccccctgcgttcaaacctccactgccaaagacagcagtgttacctggtccatctccttct
tctacaagtgcaactggcagtttctgtgtttctacacctcatccaaagacctcttctcct
ggtctgtcttccagttctggaagtgccactggtagtttctataaacaaggaaccaaacat
ggagccacacccccatctgtccagagtgcagtgagacggcagccttcctccagcagtact
gacattagcaattctgtacctgcgaagacccctgccgtcacagtcagaggaaaatgtgtc
tctcactcagaggagcgtttcagagtggaagtcagctaccatgctgagctgattgctgtg
ttcaaaaacatcccttctcggaactatgaccctgctacaaagatgtggaacttcagtctt
gaggaccatcgtcagctaatggaggaggcaggctccatctcctgtgtatgtctgaaacct
ctggaggggatggggggtattgccgtggcggcggcggcgtcgtctagccggtcccgtgac
gctcctgcgccggcggccctgctgaagctgtgtagtggctggcagagaccaggggccacc
gtacagggccacgccaccctggtgtcacgatcacgcttcgaggtcgacgttggctaccat
gttgacgtcatcgctgctttcaaacagatgccgtccaagaactatgatatgaagacaagg
aagtggagcttcttgcttgaggattataaaagacttatggatgctcttggtaccattcca
tcagtagagattgagcctctccctagggctgtggtccaggtgttctctgccctgtttgaa
ggcagccagacgtggccatcagaggttcctgaagctgacctgtcctccatcgacccctca
ttgacacgtagtctcatgcccttccagagagatggtgtcaactttgcggtgtccaaagat
ggccgcctcctcctggcggatgacatgggtctggggaagacagttcaggccatctgcata
gctgcctactacaggaaagagtggcctctattagtggtggccccctcttcggtcagattc
acctgggctgaggcgttcaggcggtggctgccatctgtgcagcccgacagtatcaatgtg
attgtcaaagggaaagacaacctgaggggtggtctggtcaacatcatcagctatgatcta
ctgagcaggatggacaagcagcaggcagctaaccccttcaatgtcctcatcatggatgag
tcccactttctgaagaacatgaagactgcccgctttaagtctgccttgccactgctcaag
gtagctaagcgtgtgatcctgctgtcggggactcctgccatgtccagaccctcagagctc
tacagtcagatcctggctgtcaagccctccctgttcccccgcttccatgactttgggacc
agatactgcaatgccagacagctgccgtggggttgggactattctggctccagtaaccta
ggagaactgaagctggtgttggagaagagtctaatgttacgccgtctcaagtccgaggtc
ctctctcagcttcctgccaagcaacgcaaggttgtcacggtgaccacagacggtatcaac
acccgcaccaaggcagctctgtcagccgcagccaaggaactggccaaggggcaacacaac
aacaacaagataaaggaggctctgctggttttctttaaccacacagctgaggccaagatt
aaagctatcatggagtacatcatggacttgttagagtgcggaagagaaaaattcctggtg
tttgctcatcacaagctggtcctggactccatcaccaaggggctgggagagaagggtatc
gactacatccgtatagatggatccaccccgtcatcagatcggcagcagctctgtgaccgg
ttccagttcactgaccagagctgtgtagcagtgctctctatcactgcagctaacatgggc
ctcaccctgcactctgctgctctggtggtgtttgctgagctgttctggaaccctgggata
atgatccaggctgaggacagagtgcatcgtatcggtcagaccagcaacgtggacattcac
tacctggtcgccaagggaaccgcagatgactacctgtggcccatgatccaggagaagatg
aatgttctggagcaggtggggctctcagaatccaacctgttagagaaggcagagtctgcc
agattccactccaaggacccccagcagagaaggatcactgagatgttccagaggtcgttc
actgaggaggaggatgatgctgatatggatgaagcccttctattggaggctgtggatgcc
tgggatgaccctagcaaccacccaggaagtagtttctgtcacacaggaagtgatgtagaa
gagagccccagcaagaagagacgcatagaggactactttggcagataa
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