KEGG   Coregonus clupeaformis (lake whitefish): 121555015
Entry
121555015         CDS       T08357                                 
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    121555015
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cclu03041]
    121555015
   03036 Chromosome and associated proteins [BR:cclu03036]
    121555015
Spliceosome [BR:cclu03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    121555015
 Complex B
    121555015
 Complex C
   U2 SnRNP specific factors
    121555015
Chromosome and associated proteins [BR:cclu03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    121555015
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Adaptin_N UNC45-central DUF2298 DUF5870
Other DBs
NCBI-GeneID: 121555015
NCBI-ProteinID: XP_041724710
LinkDB
Position
40:complement(19451283..19469233)
AA seq 1328 aa
MAKIAKTHEDIEAQILEIQGMKAALVEEGGDQGVGLDSTGYYDQEIYGGSDSRFAGYVTS
IAANEQEDDDEEDSSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPAKIAEREDE
YKARRRQMIISPERLDPFADGGKTPDPKLQSRSYMDVMKEQHLTKEEKEIRQQMAEKAKT
GDLKAVNGSAASQAAAAAAAAKRKRRWDQTAEKQDQSGTPSNAGTPKKMSSWDQADQAAE
QTPGHTPGHTPSNSRWDETPGRNKGSETPGATPSTRMWDPTPSHTPAGAATPGRGDTPGH
TTPGHGGATGSVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKS
RWDETPASQMGSSTPLMTPGKTPIGTPAMNMATPSPGHLMSMTPEQLQAWRWEREIDERN
RPLTDEELDAMFPEGYKVLPPPAGYVPIRTPARKLSATPTPMGGMTGFHMQQEDRSMKQI
NDQPSGNLPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAAL
RQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILV
VIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVA
SALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVD
EQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPL
MDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFK
HFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIM
GNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTV
LWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGA
LKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWM
RICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAI
AIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDA
LMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEG
LRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPHVYNDEKNPYL
RYELEYFL
NT seq 3987 nt   +upstreamnt  +downstreamnt
atggcgaagatcgccaaaacacatgaagacattgaggcccagatcctggagatccagggc
atgaaagctgccctggtggaggagggaggagatcagggtgtgggcctggactccactgga
tactacgaccaggagatctacggcggcagcgacagccgcttcgctggatatgtcacctcc
atcgctgccaatgaacaggaggatgatgatgaggaggactcatcgacaagtctgcttgga
cagaagaaaccgggatatcacgctccggtggctatactcaatgcaataccacagtcagat
gaacagtacgacccgttcgccgaacaccggcccgcgaagattgcagagcgtgaagacgag
tacaaggccagacgacgacagatgatcatctctccggagcgacttgacccctttgcagac
gggggcaaaacgccggaccccaagctgcagtccaggtcgtacatggacgtcatgaaggag
cagcacctgaccaaagaggagaaagagatccgtcagcagatggcagagaaggccaagaca
ggagacctgaaggctgtcaacggctctgctgcctcccaggctgctgctgctgccgccgcc
gccaagcgtaaacgccgatgggaccagacagccgagaaacaggaccaatcgggaaccccc
agcaacgccggcacacctaagaagatgtccagctgggaccaggccgaccaggctgctgag
cagaccccaggacacacccctggccacaccccctccaacagccgctgggacgagaccccc
ggaaggaacaagggcagcgagacaccaggggccacccccagcacccgaatgtgggacccc
acccctagccacaccccagctggagcagccacgccaggcagaggggacacaccaggacac
accacccctggacacgggggagccacaggcagcgtgcgcaaaaaccgatgggacgagacc
cccaagacggagagagagacccctggtcatggtagtggttgggccgagaccccccgtaca
gaccgaggagatgagtcagtgggagagacccccacccccggggccagtaaaaggaagtcc
cgttgggacgagacacccgccagccagatgggctcttccaccccactgatgacccctggg
aagactcccatcggaacccctgccatgaatatggccactccctctccaggtcacctgatg
agcatgaccccagagcagctgcaggcgtggcgttgggagagggagatcgacgagaggaac
cgaccactcacagacgaggagctggatgccatgttcccagagggatacaaggtccttccc
ccaccagcaggctacgtgcccatccgtaccccagcccggaagctgtcggccacccccacc
cccatggggggcatgacaggcttccatatgcagcaggaggaccgttccatgaagcagatc
aatgaccagcccagtgggaacctgcccttcctcaaaccagacgacatccagtactttgac
aagctgctggttgaggtggatgagtccactcttagcccagaggaacagaaggagcgtaag
atcatgaaactgctgctgaagatcaagaacggaacacctcccatgagaaaggctgccctg
cgtcagatcacagacaaggcgagggagtttggagcagggcccctgttcaaccagatccta
cccctgctcatgtctcctactctggaggaccaggagcgccacctactggtcaaggtcatc
gaccgcatcctctacaagctggacgacctggtccgcccatacgtacacaagatcctggtg
gtgattgagccgctgctgattgatgaagattactacgccagagtggagggtagagagatc
atctctaacttggccaaggctgccggcctggccactatgatctccactatgagacctgat
attgacaacatggacgaatacgtcagaaatacaacagctagagctttcgctgtcgtagcg
tccgctctgggtatcccctccctgctgcccttcctcaaggctgtgtgtaagagcaagaag
tcatggcaggcccgccacacgggcatcaagattgtccagcagatcgccatcctcatgggc
tgtgccatcctaccccatctgaggagtctggtggagatcatcgagcatggtctggtggat
gagcagcagaaggtacggaccatcagtgccctggccatcgctgccctggctgaggctgcc
acgccctacggtatcgagtcctttgactctgtactcaaacccctgtggaagggtatcaga
cagcacagaggaaagggtctggctgcgttcctgaaggccattggctacctgatccctctg
atggatgctgagtatgctaactactacaccagagaggtcatgttgatcctcatcagagag
ttccagtcccctgacgaggagatgaagaagatcgtgctcaaggtggtgaaacagtgctgt
ggtactgacggtgtggaggccaactacatcaagacagagatcctgccccctttcttcaag
cacttctggcaacacaggatggctctggacagacgcaactacagacagctggtggacaca
acagtggagctggccaacaaggtgggtgcggcagagataatctctcgtatcgtagatgac
ctgaaggacgaggcagagcaatacaggaagatggtgatggagaccatagagaagatcatg
gggaacctgggagctgctgacatcgaccacaagctggaggagcagctgatcgacggcata
ctgtacgccttccaggaacagaccacggaggactctgtgatgctgaatgggtttggcacg
gtggtgaatgccctggggaagagggtgaagccctacctgcctcagatctgtggtacggtg
ctgtggcgtctcaacaacaagtccgccaaggtccgccagcaggctgctgacctcatctcc
cgtaccgccgtggtcatgaagacctgccaggaggaaaagctgatgggtcacctgggagtt
gtgttatacgagtatctaggagaagagtatcctgaagtactgggaagcatccttggtgct
ctcaaggccatcgtcaacgtcattggcatgcacaagatgactccaccaatcaaagacctg
ctgcctcggctgacgcccatcctgaagaacagacatgagaaggtgcaggagaactgtatt
gacctggttggcaggattgctgacaggggtgctgagtacgtgtctgccagggagtggatg
cgtatctgctttgagctgctggagctcctcaaggcccacaaaaaggccatccgcagagcc
accgtcaacaccttcggatacatcgccaaggctatcggaccccatgatgtgctggccaca
ctacttaacaacctgaaggttcaggagcgtcagaacagagtgtgtaccaccgtagccatc
gccatcgtggctgagacctgttctcccttcaccgtgctccccgccctcatgaacgagtac
cgcgtgcccgagctcaacgtgcagaacggcgtgctcaagtccctgtccttcctgtttgag
tacatcggggagatgggcaaggactacatctacgctgtcacgcccctgctggaggacgcg
ctgatggacagagacctggtccacagacagactgccagtgccgtggtgcaacacatgtcc
ctgggcgtctacggcttcggctgtgaggactcccttaaccacttgttgaactacgtgtgg
cccaacgtgtttgagacgtcgccccatgtgatccaggctgtcatgggggccctggagggc
ctcagggtggcaatcggcccctgccgcatgctgcagtattgcctgcagggtctcttccac
ccagccaggaaggtccgagacgtctactggaagatctacaactccatctacatcggttcc
caggatgctctgatcgctcactacccccacgtctacaacgacgagaagaacccttacctc
cgctatgagctggagtacttcctgtga

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