KEGG   Coregonus clupeaformis (lake whitefish): 121555107
Entry
121555107         CDS       T08357                                 
Name
(RefSeq) integrin alpha-4
  KO
K06483  integrin alpha 4
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu04510  Focal adhesion
cclu04512  ECM-receptor interaction
cclu04514  Cell adhesion molecules
cclu04672  Intestinal immune network for IgA production
cclu04810  Regulation of actin cytoskeleton
cclu04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    121555107
   04514 Cell adhesion molecules
    121555107
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    121555107
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    121555107
   04810 Regulation of actin cytoskeleton
    121555107
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    121555107
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cclu04147]
    121555107
   04515 Cell adhesion molecules [BR:cclu04515]
    121555107
   04090 CD molecules [BR:cclu04090]
    121555107
Exosome [BR:cclu04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   121555107
  Exosomal proteins of other cancer cells
   121555107
Cell adhesion molecules [BR:cclu04515]
 Integrins
  Integrin alpha subunits
   121555107
CD molecules [BR:cclu04090]
 Proteins
  121555107
SSDB
Motif
Pfam: Integrin_A_Ig_1 FG-GAP Integrin_A_Ig_2 Integrin_A_Ig_3 FG-GAP_3 DUF11 DUF5370
Other DBs
NCBI-GeneID: 121555107
NCBI-ProteinID: XP_041724845
LinkDB
Position
40:20820217..20855342
AA seq 1019 aa
MERKKPGIIYCCWSVLLAWCCSLTDCYNLDVDHPVSFRGPNGSLFGYSVLLHKNKQNTWL
LIGAPVANSTFDPSLKKPGAIYKCSISGIRECQQISTGVDSCGKTCFSESDNQWLGVSLS
RQPSDGHVLACGHRWKNVFYSRNDNQNKLPHGVCYRYEADLKQSQPLIPCYKDHQRKFGE
DYGSCQAGISNFLTEDLIIMGAPGTSYWTGSVLVYNTSSRVLSAYVDDDSTVLYGSYLGY
SVGAGHFFHPDSTEIVGGAPQHRQTGKAYLFRAEENMLKIISEVKGSKLGSYFGASVCAV
DLNGDGLSDLLVGAPMYSTMREEGRVHVYINQGAANMKEAEFQLAGSKSYAARFGETITD
LGDIDDDGFPDVAVGAPQEEELRGAIYIYNGRKTGISQTYSQRITGSLLGNELKMFGQSV
SGGIDVDGNGYQDIAVGAFLSDSAVVLRTRPVVVVEASMPLPVSVNRSVALCSDNGLPAV
CINATVCFRVRARRYNGLIELQYNLTADTHHKESFPSRFHFHGNGTSNATTGQVKARHDQ
LTCVTHQAFMRKDVRDIFTPIHFEVTYALREHTVRNWGSRTFPALKPILQQRGGHSNLVA
NKTEFARYCSLANCSTNLQVSAYLVLPQKHNNMPYFALGNGKTIMLNTTLVNAGDDAFLP
RLQLNFPSNLQYIKVLDAEEKYVSCDISEENKTIVGMDCSVGNLYFSSGAKVNISFLLDV
NQSSSAGDISISINTSGDNYENVDLLHDNSATLMLPLRYGVDVSVHGFVTPTSFVFGDQE
PTPVDCYTETFNYTYKVVNIGPSKSLNTKVEIDIPKILSPYPYRLLHIVDFQTSLGECSI
KNGSITVEDDCEVPRSSLIKELVFFFSKTSKRKMFCAHGDDLCLILECRLGDMDIGKEAT
IHMEVKLNPTVLQLSPGRHGVMLIESTGIITSPREDPHTILLQQIPIAQVVLEAHFNQKP
QAAVEVFIIVGSLLVGLLILTLLIFALWKAGFFKRQFKEEIRRDSWDYVPKSEKTESTS
NT seq 3060 nt   +upstreamnt  +downstreamnt
atggagcgaaagaagccgggtattatttattgctgttggagcgttcttctcgcttggtgc
tgtagtctcactgactgttacaatctggacgtagaccatcccgttagttttagaggccca
aatggatctttatttggatattctgtattgttacataagaacaagcaaaacacatggtta
ttaatcggagctccagttgcgaattcaactttcgatccatcccttaaaaaaccaggagca
atttataagtgcagcatctcaggcattagagaatgtcagcaaatatcaacaggtgtggac
agttgtgggaagacttgcttctctgagagtgacaaccagtggctcggagtcagcctgtct
agacagcccagtgatggccatgtattggcatgtgggcatcgttggaagaacgtgttctat
tccaggaatgacaaccagaacaagctgcctcatggtgtctgctacagatacgaagctgac
ctcaaacagtctcaaccacttatcccatgctataaagatcatcaacggaagtttggtgaa
gactacggatcatgccaagcaggaatatccaactttctgactgaggacttgataataatg
ggagcccctgggacatcgtactggactgggtctgtcctggtctacaacacctccagcagg
gtcctgtctgcctatgtggatgacgacagcactgtcctctatggcagttacctgggctac
tcggttggcgctggccacttctttcaccctgactccacagagatcgttggaggtgcgccc
caacacaggcagactggtaaagcctacctattcagagctgaagaaaacatgctgaagatc
atcagtgaagtcaagggaagcaagctgggctcatattttggtgccagtgtgtgtgccgtg
gacctgaatggagatggcctgtctgatctactggtaggagctcccatgtacagcaccatg
agagaggagggacgagtccatgtctacatcaaccaaggagctgctaatatgaaggaagca
gagtttcagttggctggaagcaagtcgtatgctgccagatttggggagaccataacagat
ctgggagatattgatgacgatggctttcctgatgtggcggtgggggctccgcaggaggaa
gagctgcgtggggctatatatatctacaatgggaggaagacagggatctcacagacctac
tctcaaaggatcaccgggtctcttctgggtaatgagttaaagatgttcggccagtcagtt
tccggaggcatcgatgttgacggaaacggttaccaagacattgctgtaggggccttcctc
tcggactccgctgtggttctgaggactcgtccggtggtagtggttgaggcctccatgccc
ctgcctgtcagtgtgaaccgctctgtagctctgtgttctgacaacggtcttcctgctgtc
tgcatcaacgctacagtctgcttcagggtccgtgctcgacgctacaacggactcatagag
ctgcagtataacctgacagccgacacgcaccacaaggagtctttcccctcccgcttccat
ttccacggcaacgggacgtccaacgctacgacagggcaagtcaaggccagacacgaccag
ctgacctgcgtcacccaccaggccttcatgaggaaagatgtccgggatatcttcacgccc
atccattttgaggtgacgtacgccctcagagagcacactgttcgtaactggggatccaga
actttcccagccctgaaacccatcctgcagcagagaggggggcacagcaacctggtggcc
aataagacggagtttgctcggtactgttctttggccaactgttcaacaaatctgcaggtc
tctgcttacctggtcttaccacagaaacacaacaacatgccgtactttgcattgggtaat
gggaagaccatcatgttaaacacaaccctggtgaacgctggagatgatgccttcctcccc
aggctccagctaaatttcccctccaacctgcagtacatcaaagtgcttgatgcagaggag
aagtatgtgagctgtgacatttcagaggagaacaagacaatagtaggaatggactgcagt
gttgggaacctgtacttcagctctggagccaaggtgaacatcagctttctgttggatgta
aaccagagtagcagtgctggtgacattagcatctccatcaacactagtggagacaattat
gaaaatgtggatcttctgcatgacaactcagccactctgatgttaccattgagatatggc
gtggatgtcagcgtccatgggtttgtgactccaacatcctttgtatttggtgaccaggag
cctactccagttgattgctacacagagacattcaactacacttacaaggttgtcaatatc
ggtccaagcaaatctctcaacacaaaagttgagattgatattcccaagatactatcaccg
tatccatacagattactccacattgtagattttcagacctctcttggagaatgctccatt
aaaaacggctctatcacagtagaagatgattgtgaggtgccacgatcgtctttaatcaag
gaactggtcttcttcttctccaaaaccagcaaacgcaaaatgttctgtgctcacggagac
gacctgtgcctgattctggagtgtagactaggagacatggacattgggaaagaagccacc
attcacatggaagtgaagctgaaccccaccgttctacaactctcaccgggtcgtcatgga
gtgatgctgatagagagtactggcatcatcacatcaccaagggaggaccctcataccatc
ctattacagcagatccctatcgctcaggttgtgttggaggcccacttcaaccagaagcct
caggcagcagtggaggtgttcatcattgtagggagtctactggtggggctcctgatcctg
accctgctcatcttcgccctctggaaggctggtttctttaagaggcagtttaaggaggag
atcaggagggatagctgggactatgtaccaaagagtgagaagactgagagtacatcctaa

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