Coregonus clupeaformis (lake whitefish): 121555270
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Entry
121555270 CDS
T08357
Symbol
caprin1b
Name
(RefSeq) caprin-1b isoform X1
KO
K18743
caprin-1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121555270 (caprin1b)
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
121555270 (caprin1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Caprin-1_C
Caprin-1_dimer
PSK_trans_fac
DUF1940
Motif
Other DBs
NCBI-GeneID:
121555270
NCBI-ProteinID:
XP_041725017
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All DBs
Position
11:40579968..40626514
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AA seq
728 aa
AA seq
DB search
MPAAMNGNRTVQSASPDMGSTPGQITLGGGQSSGAQTEAMKQVLGVIDKKVRNMEKKKGK
LDDYQAKKNKGERLNQDQLDALTKYQEVNNNLEFARELQKSFLALGQDIQKAVKKAVRRE
QLQREEAEQKRLKTVLEIQFLLDRLGEDSVRQELRQGATGGGTPSLLTDSELTTLDELYK
LVGPERDQNTRLSDQYEEASQHLTDLLEGKDKAVAGTTYKALKDSLDRVLLSGYFDKAQS
HQNGVCEEEEEEEDDEEQFEAVVESAEEQTVDPEGEIVEEYIEPIKVEATEFVNRQFIPD
TTYSSSDEQGDKWTTETEPLALPLAPPPQVVSVIQQQPVQSAPPPIALETHPLNVATPTV
TPPVVRKQVVQDLLSQMQGPYNFMQDSMLEFDGQLIDPAIVSAQPMKPAAQNMDLPQLGC
PPVHPKSRLSPHNTVPVQPEPMQVPMVSPTPESYSTPCPMFQSSHTPEPRPHADSIDTIQ
ASMSLSSEQQQQQPLPSSALPPASSQTQQQVFQPVNISKPPHSSGINVNAAPFQSMQTVF
NLNAPVPPANEAEALTQASQYQNSYNQQGFSSQSQQLGVEQTEMQTEQLQSVVGAFHSQD
PSLPSQALSQGQQPSQQGPGFVPGAGRQAQSFYNSRGMTRGGPRNARGMVNGYRGPSNGF
RGGYDGYRPPFANTPNSGYQQAQFNNPRDYSNGGNYQRGDGYNQNYKRGAGQGSRGVSRG
GNAQAMRS
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcagcgatgaacggcaacaggacagtgcagtcggccagcccggacatgggatcc
actcctggacagatcaccctgggtggagggcagtcctctggggcccagaccgaggccatg
aagcaggtccttggcgtcatcgataagaaggtccgcaacatggagaagaaaaagggcaag
ctggacgattatcaagccaagaagaataaaggggagcgtctcaaccaggaccagctggat
gccctgaccaagtatcaggaagtgaataataatctggagtttgccagagagctacagaag
agcttcctcgcactggggcaagatatccagaaggcagtgaagaaggcagtgcggagagag
cagctccagagagaggaggctgagcagaagagactgaagactgtgctggagatccagttc
ctcctggacaggctgggagaggacagtgtgaggcaggagctgagacaaggggccaccggg
ggaggcacaccctcactcctcacagactcagagctcaccaccctggacgagctttacaag
ctagtggggccagaacgagaccaaaacaccaggttgtctgaccagtacgaagaggcttct
caacacctcactgatctgttggaggggaaggacaaagctgtagcaggaacaacatacaaa
gctctgaaggacagcctggaccgggtgctgctaagcgggtactttgacaaagcccagtcc
caccagaatggagtgtgtgaggaggaggaggaggaggaggatgatgaggagcagtttgag
gccgtagtggagtcggcagaggagcagaccgtcgacccagagggtgaaatagttgaagag
tacatagagccaattaaggtggaggctacagagttcgtaaacaggcagttcattccagac
accacgtacagcagcagtgacgagcaaggagacaagtggaccacagaaacagagcctctg
gccttgcctcttgctcctccccctcaggtggtgagtgtcatccagcaacagcctgtacag
tcagcccctccccccatcgccttggagacccaccccctgaacgtggccacacccacagtc
acacccccggtggtcaggaagcaggtggtccaggacctcttgtcacagatgcaggggcct
tacaacttcatgcaggactctatgctggagtttgatggccagctcattgacccagccatc
gtgtcagcccagcccatgaagcctgcagctcagaacatggaccttcctcagttgggctgt
cccccagtccacccaaaatcacgcctctcaccacacaacaccgtcccggtacagcctgag
cccatgcaagttcccatggtgtcccccacgcctgagtcatactccacgccgtgccccatg
ttccagtcatcacacacgccagaaccacgcccacatgcagactccatcgacaccatccag
gcgtccatgtccctgtcgtcagagcagcagcagcagcagccccttccgtcctcggccctc
ccccctgcctcctctcagacccagcagcaggtcttccagcctgtcaacatctccaaaccc
ccacacagctccggcatcaatgtcaatgcagcaccattccagtccatgcaaacagtgttc
aacctcaatgcccctgtcccgccggccaatgaggcggaagccttgacccaggccagccaa
taccagaacagctacaaccagcagggtttcagcagccaatcacagcagctcggtgtggag
cagaccgagatgcagacggaacagctgcagtctgtggttggtgccttccactcccaggac
ccatccctgcccagccaggccctgtcccaggggcagcagcccagccagcagggtccaggg
ttcgtccctggggctggtcgccaggcccagtccttctacaacagcagaggcatgacccgc
ggaggcccccgtaatgcccgcggcatggtcaacggatacagaggcccctccaacggattc
agaggtggatatgacggttaccggcctcccttcgccaacactccaaactctggatatcaa
caggctcagttcaacaaccctcgggactactccaatggtggcaactaccagcggggggat
ggttataatcagaactacaagcgtggcgcaggccagggatccagaggggtgtctcgagga
ggcaatgcccaggccatgaggtcctga
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