Coregonus clupeaformis (lake whitefish): 121555445
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Entry
121555445 CDS
T08357
Name
(RefSeq) HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121555445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121555445
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
121555445
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
GTP_EFTU_D4
DO-GTPase2
Aq_aa27
Motif
Other DBs
NCBI-GeneID:
121555445
NCBI-ProteinID:
XP_041725227
LinkDB
All DBs
Position
Unknown
AA seq
703 aa
AA seq
DB search
MSRHRNVRGYNYDEDLDDDDVYGQSVDEDYCISPATAAQFIYSSRQERPNVEPPLEEEEM
EEEEAIPTSPTLTHNLNPLDQGMLYSCLDQMRAVLGDAVPESVLTQAALRCAFDPQRALD
AVLSDESAGLPPPANKDAPLPQRANKETAVVPRANQEASAAPRPEKAKGREAAQSKLDLE
VLPKVARMTVSGKKQTMGFDVPSTEENGVVPSPSVHRRSSPDGVTMKSSPDTPSKRPETP
SKGSGRAEEPPSVPTPGRTPGKARQQLNVRAELEKRQGGKPLLNLVVIGHVDAGKSTLMG
HLLYLLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERDRGVTMDVGMTKFETASK
VVTLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFEAGGQTREHGLLVRSLGV
TQLAVAVNKMDQVNWQQERFKEIISKLGHFLKQAGFKDSDVFYVPTSGLSGENLTTKSSA
PELTSWYSGPCLLEQIDNPQRSIEKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGDRVL
AMPPNETCTVKGITLHDEPLDWAAAGDHVSLTVTGMDIIKINVGCVFCDIKEPIRACSRF
RARVLLFNIEVPITQGFPVVLHYQTISEPATIRKLVSVLHKSSGEVLKKKPKCLGKGMNA
VVEIQTQRPVALELYKDFKELGRFMLRYVGSTIAAGVVTEIKE
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggcacagaaatgtccgaggctacaactatgatgaagaccttgatgatgacgac
gtgtatggacagtctgttgatgaggactactgcatctccccagctacagcggcccagttc
atctactccagcaggcaggagaggcccaacgttgaaccacccttagaggaggaggagatg
gaggaagaggaggccatacccacctcccccaccctcacacacaacctcaaccccctggac
caaggcatgttgtactcgtgtctggaccagatgcgtgcggtgctgggtgatgccgtgcca
gagtcagtccttacccaggctgccttgcggtgcgccttcgaccctcagagagccttggat
gccgttctatcagacgagagcgccgggcttccgcccccagccaataaggacgcaccactg
ccgcagagggccaataaggagacggcagttgtaccgagagccaatcaggaagcctcagcc
gcaccgcgaccagagaaagctaagggccgtgaggcggcacagagtaaactggacctagag
gttctgcctaaagtggcccgcatgaccgtctcagggaagaaacagaccatgggcttcgac
gtgcccagtacagaggagaacggggttgtccccagcccctccgtgcatcgcaggagtagc
cctgatggcgtaactatgaaaagcagccctgacaccccctccaagcggccggagacaccc
tctaaagggtccgggagggcagaggagcccccttccgtccccaccccaggacggaccccg
ggaaaggccaggcaacagctgaacgtcagggcagagctggagaaaaggcaaggaggcaag
ccactcctcaacctggtggttataggtcatgtggatgctgggaagagtactctgatgggt
cacctgctttacctgttgggaaacgtcaacaaacgcaccatgcacaagtacgagcaggag
tccaaaaaggctggcaaggcctcgttcgcctacgcatgggtcctggatgagaccggggag
gagagggacaggggtgtaaccatggacgtggggatgactaagtttgagaccgcctctaag
gtggtgactctgatggacgctcccggacacaaagacttcatccccaacatgatcactgga
gcggcccaggcagacgtggcggtgttggtggtagacgccagcagaggtgagtttgaggcg
gggttcgaggcgggcgggcagacgcgggagcacggcctcctggtccgttcgttgggcgtc
acgcagctcgccgtcgccgtcaacaagatggaccaggtaaactggcaacaggagcgattc
aaagagatcatctccaaacttggacatttcctgaaacaggctggattcaaggactctgac
gtgttctacgtcccgaccagcggtctatcaggagagaacctcaccactaagagttctgct
ccggagctgacatcctggtactccggaccctgtcttctggaacagatcgataacccccag
aggtcgatagaaaagccattccgactgtgtgtctcagacgtcttcaaagatcagggctca
gggttctgtgtaacagggaagatcgaggcggggtacattcagacaggagacagagttctg
gccatgccccccaatgagacatgcactgttaaaggtatcactctccatgatgagcctctg
gactgggcagctgcaggggatcatgttagtttgaccgtcactggcatggacatcatcaag
attaatgtgggctgtgtgttctgtgatatcaaggagccaatcagagcgtgttcccgcttc
agggccagagtcctgctcttcaacatagaggtccccatcacacagggcttccccgttgtg
ttacactaccagacgatcagtgaaccggccactattaggaagctggtcagtgttcttcac
aagagcagtggagaggtgctcaagaagaaaccaaagtgtctgggtaagggtatgaacgcg
gtggtggagatccagacccagaggcctgtggcgttggagctctataaggacttcaaggag
ctgggacgcttcatgctgagatacgtagggtcaaccatcgccgccggggtcgtcaccgag
atcaaagaatga
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