Coregonus clupeaformis (lake whitefish): 121555566
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Entry
121555566 CDS
T08357
Name
(RefSeq) retinoic acid receptor RXR-beta-A-like isoform X1
KO
K08524
retinoid X receptor alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03320
PPAR signaling pathway
cclu04148
Efferocytosis
cclu04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
121555566
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
121555566
03320 PPAR signaling pathway
121555566
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121555566
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cclu03310
]
121555566
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
121555566
Nuclear receptors [BR:
cclu03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
121555566
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
121555566
NCBI-ProteinID:
XP_041725337
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All DBs
Position
Unknown
AA seq
431 aa
AA seq
DB search
MSSHQPTSSASNSPTSTFGSPFSVISPSLGSPGVAPSMGYGPISSSQINSTMGMHSISSS
DDVKPPFGLRPMSAHSPGIMLSQKRMCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLS
YTCRDNKECLVDKRQRNRCQYCRYQKCLAMGMKREVVQDERQKSVQEERQRIREREEGLE
CSSAVNEEMPVEKILEAETSVEQRVELHSDAGSAGSSPHDAVTNICQTADKQLFALVEWA
KRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGVLLANELHRDNAHSAGVAAI
FDRESVQSAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDAKGLSNTGEVEL
LREKVYASLEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFL
MEMLEAPHQLA
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcgcatcagcccaccagttcagcctccaacagtcccaccagcacctttggctca
cctttctcagtcatcagcccctcactgggctcccctggtgtggcaccctccatgggttat
gggcctattagcagtagtcagatcaactctacaatggggatgcactcgatcagcagctcc
gatgatgtcaagcccccgtttggcttgaggcctatgtctgcacacagccctgggataatg
ctctcccagaaacgcatgtgtgccatctgtggagaccgctcctctggtaagcactacggt
gtgtacagctgtgaaggttgcaagggcttcttcaaacgcacagttcgcaaggacctgagc
tacacctgcagggataacaaagagtgcctggtggacaagcgccagcgcaaccgctgccag
tactgccgctaccagaagtgtctggctatgggcatgaagagggaagtggtccaagatgaa
cgtcagaaatcagtccaggaggagcgtcagaggatcagggagcgagaggagggactggag
tgcagcagtgctgtgaacgaggagatgcccgtggagaagatcttggaggcggagacgtcc
gtggagcagagggtggagctccactctgacgcaggctccgctggtagctctccccatgat
gcggtgacaaacatctgccagactgcagacaagcagctgtttgcattggtggagtgggcc
aagaggatcccccacttctctgagctgcccctggatgaccaggtcatcctcctgcgtgca
gggtggaatgaacttctgatcgcctccttctcccaccgctccatcgctgtgaaggacggg
gtcctgctggccaatgagctgcaccgggacaacgcacacagtgcaggggtggcggccatc
tttgacagggagagtgtgcagagtgccgaggtgggagccatatttgacagagttctcact
gagctggtcagtaagatgagagacatgcagatggacaagaccgagctgggctgcctcaga
gccatcgtcctcttcaacccagacgctaaaggtctatccaacaccggggaggtggagctc
ctgagagagaaggtctatgcgtcactggaagcctactgcaagcagaaatacccagagcag
cagggaaggtttgctaagctcctcctcaggctgccagcactacgttctattggcttgaag
tgtttggagcacctgttcttcttcaagctgattggtgacacccctatcgacacgttccta
atggaaatgcttgaagcgcctcatcagttggcatag
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