Coregonus clupeaformis (lake whitefish): 121555659
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Entry
121555659 CDS
T08357
Symbol
smarca2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121555659 (smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121555659 (smarca2)
03036 Chromosome and associated proteins [BR:
cclu03036
]
121555659 (smarca2)
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121555659 (smarca2)
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
121555659 (smarca2)
Chromatin remodeling factors
BAF complex
121555659 (smarca2)
PBAF complex
121555659 (smarca2)
GBAF(ncBAF) complex
121555659 (smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
HSA
Bromodomain
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
121555659
NCBI-ProteinID:
XP_041725418
LinkDB
All DBs
Position
Unknown
AA seq
1627 aa
AA seq
DB search
MSTPTEQAGGMSQSHPGPSPCPGRSPGPGPSPGSGPPSLQGQGAGDYLQDTMHPMHQPME
GVDEKGTGDETNYGQMKGVGMRALHSGMGPPQSPLDQHSNQGYMPPHPSPMGVPEHASSP
LSRGGPTPPMPPQMSPVPSGSMMPQMDPQSAMGPLGRGCSSFSPVQLQQLRAQILAYKIL
GRGQPLPENLQLAVQGKRSLPTMQQQQQQQQPQPGTGSLYSRPPGMPMSSMSVPQSGPGP
TTTMPGQNQTHGPKPWPEGQGGDAPSNPQKLLAPPPSGRPSPAPPQAPPPGPMSGPSITH
QPQGQQPSPVITLQQKQNRVTPIQKPQGLDPTEILQEREYRLQARIAHRIQELESLPGAL
PPDLRSKATVELKALRLLNFQRQLRQDVVQCMRRDTTLETALNSKAYKRSKRQTLREARM
TEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKDYHRSISGKMQKLNKAIATWHTNTE
REQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTDLVYEHK
AAQAANMKKKMKKKKRKKKKKNMDESGEGMSGIGPDGEPMDESSQMSELPVKVIQTETGM
VLQGLDAPKSSQLEAWLEMNPGYEVAPRSDSEESGSEFEEEDEEEVPGVSSRPDSQSEEK
KIIDPNSDEFPEIVTKHIIESAKQDVDDEYTVPETELTIFQQSYYGVAHAIIERVDKQSS
LLINGMLKHYQVQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYL
IIVPLSTLSNWVYELDKWSPSVVKIAYKGTPAMRRGLVAQLRSGKFNVLLTTYEYIIKDK
QILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNF
LLPTIFKSCNTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQ
LPEKVEYVIKCDMSAIQRVLYRHMQGRGILLTDGSEKDKKGKGGAKTLMNTIMQLKKICN
HPYMFPHIEESFAEHLGFPNGVISGHELYRASGKFELLDRILPKLHVTNHRVLLFCQMTS
LMTIMEDYFAYRNFLYLRLDGTTKSEDRAALLKKFNEKGSQYFVFLLSTRAGGLGLNLQA
ADTVVIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLCTVNSVEEKILAAAKYKLNVDQK
VIQAGMFDQKSSSHERRAFLQAILETEEQNEVGHGGVGIKIKCSSLQEEEKSQVAMEEDE
VPDDETLNQMIARNEDEFELFMSMDLDRRREDARNPKRKPRLMEEDELPSWIVKDDAEVE
RLTCEEEEEKIFGRGSRRRGDVDYSDALTEKQWLRAVEDGNLEEMEEEIRLKKSRKKRRR
GDKDGGREEGGEKAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYRDGCNRQLSEVFV
QLPSRKELPEYYELIRKPVDFKKIKERVRSHKFRSVPDLEKDVMLLCHNAQTFNLEGSQI
YEDSIVLQSVFKSARQRIVKEEESEEDSDDDDDDDDDDDEDEESEAESNSVRVKIMLGKK
ECGGSSNGARHHNKDKGKKRLGRSKAKPVVSDDDSDEDQDDNFRRKRISLRRAEVKMSEE
QKEEEEG
NT seq
4884 nt
NT seq
+upstream
nt +downstream
nt
atgtccacccctacggagcaggcgggtggtatgtcccagtcccacccgggtccctctcca
tgccctggccggtccccaggaccaggcccctcccctggctccggaccccccagcctacag
gggcagggggctggggactaccttcaggacaccatgcaccccatgcaccagccaatggag
ggggttgatgagaaggggacgggagatgagacgaactatggccagatgaagggagttggg
atgagggcgctacacagcggaatgggtcctccacagagccccctggaccaacacagcaac
caaggctacatgcccccacacccctcacccatgggtgttccagagcacgcgtccagcccc
ctgtccaggggtggccctacgccccccatgccccctcagatgtcccccgtcccgtcgggc
tccatgatgccccagatggacccccagtcagccatggggcctcttggccgcggctgctcc
tccttcagccctgtccaattacagcaactccgggcccagatcctggcctataagatcctg
gggcggggccagccgcttcctgaaaacctccagctggcggtccagggcaagaggagtctg
cccaccatgcagcaacaacaacagcagcagcagccgcagccgggcactggcagcctctac
agcaggcctcctggtatgcccatgtcctctatgtctgtgcctcagtcaggccctggtccc
accaccaccatgccaggacaaaatcagacccacgggcccaaaccctggcctgaaggtcaa
ggtggtgacgctcccagcaacccccagaagctgctagctccgccccccagtggtagaccc
tcacctgccccaccccaggcccctccccctggacccatgtccggcccctctattacccat
cagccccagggacagcagccgtcgcccgtcatcacactgcaacagaaacagaaccgtgtc
acgcccatccagaaaccacagggcctggaccccacagagatactgcaggagagagagtac
aggctgcaggctcgtatagcccaccggatccaggagctggagagtcttcctggagctctg
cctccggacctgaggagtaaagccacggtggagctcaaggctttgagacttctgaacttc
caacgacagctgcgtcaggacgtggtccagtgtatgcgtagagacaccaccctggagaca
gccctgaactccaaggcttacaagaggagcaagcgccagacgctgagggaggctcgcatg
acagagaaactggagaaacagcagaagatcgaacaggagaggaaacgcagacagaaacac
caggagtatctgaacagcatcctgcagcatgccaaggactttaaggactaccaccgctct
atctccggcaagatgcagaagctgaacaaggccatcgccacctggcatactaatacagag
agagaacagaagaaagagacagagaggatcgagaaggagaggatgaggagactcatggcg
gaggatgaggagggctacaggaagctgattgaccagaagaaggacaagcgtctggcgtac
ctgctgcagcagactgacgagtacgtagctaacctaactgacctagtctacgaacacaag
gcagcacaggccgccaacatgaagaagaagatgaagaagaagaagaggaagaagaagaag
aagaatatggatgagagcggggaagggatgagtggcatcgggcctgacggggagcccatg
gatgagagcagtcagatgagtgagctgccagtcaaagtgattcagacagaaacagggatg
gttctgcagggactcgacgcccccaagtcctcacagttggaggcctggttagagatgaac
cctggatatgaagtggctccaaggtcagacagtgaggagagcggctcagagtttgaggag
gaggatgaagaggaggtccctggagtgtctagccggccagactctcagtctgaagagaag
aagatcatcgatcccaacagtgacgagttcccagagatcgtaaccaaacacatcatcgag
tctgcaaagcaggatgttgatgatgagtacacggtgccagagactgaactgaccatcttc
cagcagtcgtactatggagtggctcacgccatcattgagagggtcgacaaacagtcttcg
ctgctcatcaacggcatgctcaaacactaccaggtgcaaggtctggagtggatggtgtct
ctgtacaacaataatctgaatggtatcctggctgatgagatggggctgggaaagaccatc
cagaccatcgccctcattacatacctcatggaacacaagagactcaacggaccctacctc
atcatcgttccactatcgactctgtccaactgggtctatgagctggataaatggtctccg
tccgttgtgaagattgcctacaaggggacccctgctatgagacgaggcctggtggctcag
ctccgcagcgggaagttcaacgtccttctcaccacctacgagtacatcattaaggacaaa
cagatcctggccaagatccgttggaagtacatgatagttgacgagggtcaccgtatgaag
aaccaccactgcaagctgacccaggtgttgaacacccactatgtggccccacggcgcctc
ctcttgacgggtacgccactgcagaacaagctgccggagctctgggccctgctcaacttc
ctgctgcctaccatcttcaagtcctgcaacaccttcgaacagtggttcaacgcccccttc
gccatgaccggggagagggtggacttgaatgaggaagagaccatcctgattatccgccgt
ctccacaaggtgctccgccccttcctgctgagacgactcaagaaggaggtggagtcccag
cttccagagaaggtggagtatgtcatcaagtgtgacatgtcggccatccagagggttctg
taccgccacatgcagggcagaggaatcctcctcactgacggatctgagaaagacaagaag
ggtaaaggaggagcgaagaccctgatgaacaccatcatgcagctgaagaagatatgcaac
cacccctacatgttcccacacattgaggagtcctttgctgagcacttaggcttcccgaac
ggagttatcagcggacacgagctgtaccgtgcatcggggaagtttgagctgctggaccgg
atcctacccaagctacacgtcaccaaccacagagttctgctgttctgtcagatgacatca
ctcatgaccatcatggaggactacttcgcctaccgcaatttcctctacttgcgcctggac
ggcaccaccaagtctgaggaccgtgcagcgctgctgaagaagttcaatgagaaaggttcc
cagtactttgtgttcctactgagtaccagagccgggggactgggcctcaacctgcaggct
gcggacactgtggtcatcttcgactctgactggaaccctcaccaggacctccaggcccag
gacagggctcatcgtattggtcagaagaatgaggtgcgtgttctgcgtctgtgtacggtc
aacagtgtggaggagaagatcctagcggctgctaagtacaaactgaacgtggaccagaag
gtgattcaggctggcatgtttgaccagaagtcgtccagccacgagaggagagcctttcta
caggccatactggagacagaggagcagaatgaggttggtcacggtggcgtggggataaag
attaaatgcagttccttgcaggaggaagagaaaagtcaggtggctatggaggaagatgag
gtgcctgatgatgagactctgaaccagatgatcgcccgtaacgaggatgagtttgagttg
ttcatgagtatggacctggaccggcggcgggaggacgccaggaaccccaaaaggaagccg
cgtctgatggaggaggatgagctgccatcttggatcgtcaaggatgacgcggaggtggag
cggctcacctgtgaggaagaggaggagaagatcttcggccgaggatcacgcaggagaggc
gacgttgactacagtgatgccctgacagagaaacagtggctcagggcggtagaggatggt
aacctggaggagatggaggaagagatccgtctgaagaagtcgaggaagaagaggagacga
ggggacaaggacggagggagggaggagggaggagagaaggcaaagaagaggcgtggacgt
ccccctgccgagaagctgtcccccaacccccccaaactcaccaaacagatgaacgccatc
atcgacaccgtcatcaactacagagacgggtgtaatagacagctgtcagaggtgtttgtc
cagctgccgtccaggaaggagctgccagagtactacgagctgatcaggaaacctgttgac
ttcaagaaaatcaaggagcgcgtgcggagccacaagttcaggagtgtgcctgacctggag
aaggatgtgatgctgctctgtcacaacgctcagacctttaacctcgaggggtcacagatc
tatgaggactccatcgtgctccagtcggtgtttaaaagtgccagacagagaatcgtaaag
gaggaggagagtgaagaggacagcgatgatgatgacgatgatgatgatgatgatgatgaa
gatgaagagtcagaggcagagtctaattcagtgagggtgaagataatgctaggtaagaag
gagtgtggcggtagcagcaacggagcccgtcaccataacaaggacaaaggcaagaagaga
ctgggtcgctccaaggccaaacccgtcgtcagtgacgatgacagcgacgaagaccaggat
gacaacttcaggaggaaaagaatcagtctgaggagagcagaagtgaagatgagtgaagaa
cagaaggaagaggaggagggttga
DBGET
integrated database retrieval system
