Coregonus clupeaformis (lake whitefish): 121555714
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Entry
121555714 CDS
T08357
Symbol
ctr9
Name
(RefSeq) RNA polymerase-associated protein CTR9 homolog
KO
K15176
RNA polymerase-associated protein CTR9
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121555714 (ctr9)
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
121555714 (ctr9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_14
TPR_16
TPR_CcmH_CycH
TPR_8
TPR_12
TPR_17
TPR_10
TPR_11
TPR_7
ARM_TT21_5th
TPR_6
TPR_Slam
ARM_TT21_4th
ANAPC3
TPR_EMC2
Motif
Other DBs
NCBI-GeneID:
121555714
NCBI-ProteinID:
XP_041725482
LinkDB
All DBs
Position
32:complement(5821928..5831202)
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AA seq
1154 aa
AA seq
DB search
MSRGSIEIPLRDTDEVIELDFDQLPEGDEVISILKQEHTQLHIWIALALEYYKQTKTEDF
VKLLEAARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDAKKELITQATLLYTMA
DKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSTNNIPALLGKACISFNKKDYR
GALAYYKKALRTNPGCPAEVRLGMGHCFVKLSKLEKARLAFGRALELNSKCVGALVGLAV
LELNSKEPDSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTE
VEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSTFVLPFFGLGQMYVYRRDKENA
AQCFEKVLKAYPNNYETMKILGSLYATSDDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ
ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNLGALHFRLGNLGEAKKYFLASLER
AKAEGEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAM
ARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQND
TYSMLALGNVWLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDSKNLYAANGIGAVLAHK
GYYREARDVFAQVREATADISDVWLNLAHIYVEQKQYISAVQMYENCLKKFYKHQNTEVL
LYLARALFKCGKLQECKQTLLKARHVAPSDTVLMFNVALVLQRLATLVLKDEKSNLKAVL
SAVKELELAHRYFSYLAKAGDKMRFDLVLASTEARQCSDLLSQAQYHVARARKQDEEEKE
IRAKQDQERDFLRQQMHKEQEEKRTKQEEDQKKLLEQRAMYVEKTKGLLSFADGMKEERK
EKRKGGGRRKKGGDFDEFVNDGSDEDLPVRRRKKRKGGSGSEEEGRKKRRRPTKGGDDGS
DDEEGGSRPKKQRKPRAGGKKFQKAEPVPPSLKGKIKSKAIISSSDSSSDEDGLKIAEDR
NPRDSGSGSDNEGGHKKRIASDSESDGGRNRSGSEAGSPQRSGNSGSDSGSDRPVKRKRV
QQQSDSEQSDNESKRSRSGSDNESRPGSPAAASGSEAGSPAGSPAGSPHRSDNGSEPEGS
ADKASNHGSGSDSD
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggggttcaattgaaattcccttacgggacaccgacgaggttattgagcttgat
ttcgaccagctgccagaaggagatgaggtcatcagtatcctgaaacaggaacatacacag
ttgcacatatggattgctcttgctctggagtattacaaacagacgaagacggaggacttt
gtcaagctgctggaagcggcccgtatcgatggaaacctggactacagagaccatgagaag
gaccagatgacctgtctggacaccctggctgcctactatgtccagcaggcacgtaaagag
aagaacaaagatgctaagaaggagctcatcactcaggccacactgctctacaccatggca
gacaagatcatcatgtacgaccagaaccacttgttgggaagagcctgtttctgccttctg
gagggggacaaaatggaccaggctgacgctcagttccactttgtcttgaaccagtctacc
aataacatccctgctctacttggtaaagcttgcatctccttcaataagaaggattacagg
ggagcactggcctactacaagaaggctctacgcacaaaccctggatgtcctgccgaggtg
aggctgggtatgggccactgctttgtcaagctcagtaagctggagaaggcccgtctggcc
tttggccgggccctggagctcaactccaagtgtgtgggagcccttgtgggcttggctgtg
ctggagctcaacagcaaggagcccgactccatcaagaacggagtgcagctcctctccaga
gcctacaccatcgaccccagcaaccccatggtgctcaaccacctggctaaccacttcttc
ttcaaaaaggactacagtaaagtgcagcacctggctctccatgcctttcacaacacagag
gtggaagcgatgcaggctgagagctgctaccagttggcccgctcctttcatgtacaggag
gactacgaccaggccttccagtactactaccaggccacccaatttgcctcgtctaccttt
gtgctgcctttctttggcctggggcagatgtacgtgtaccgtagagacaaggagaatgcc
gcccagtgctttgaaaaggtcctaaaggcctaccccaacaactatgaaaccatgaagatc
ctgggctctctctatgctacttcagatgaccaggaaaagagagacattgccaaaggtcat
ctgaagaaggtgactgagcagtaccctgatgacgtggaggcctggatcgagctggcccag
atcctggagcagaccgacatccagggcgccctctctgcctacggcacggccacccgcatc
ctgcaggagaaggtccaggccgacgttccccctgagatcctcaacaacctgggggctctc
cacttcagactgggcaacctgggagaggccaagaaatacttcctggcctctttggagcgg
gccaaagctgagggcgagcatgacgagcattactacaacgccatctctgtcaccacctct
tacaacctagccaggctctacgaggccatgtgcgaattccacgaggcggagaaactctac
aagaacatcctgagagaacatcccaactacgtcgactgttacctacgtcttggagcaatg
gctcgtgacaaaggaaacttctatgaagcttccgactggttcaaagaggctctgcagatc
aatcaggatcacccagacgcctggtccctgatcgggaatctccacttggccaagcaggag
tggggtccgggtcagaagaagtttgagcgtatcctcaagcagccgtccactcagaacgac
acctactccatgctggccctgggcaacgtgtggctacagaccctgcaccagcccaccagg
gaccgggagaaggaaaagagacatcaggatcgagccctggccatttacaaacaggtccta
cgaaacgactccaagaacctttacgctgccaacggcataggtgccgtcctggcccataag
ggctactaccgtgaggcccgtgacgtgtttgcccaggtaagagaggccacggctgatatc
agcgacgtctggctcaacctggcccacatctacgtggagcagaaacagtacatcagcgct
gtgcagatgtacgagaactgtctgaagaaattctacaagcatcagaacacggaggtgctg
ctgtaccttgctcgggcactcttcaaatgcgggaaactccaggagtgcaaacagactctg
ctgaaggcgcgtcacgtggcccccagtgacacggtgctgatgttcaacgtggccctggtg
ctgcagaggctggccactctggtgctgaaggacgagaagagtaacctaaaggctgtactc
agtgctgtcaaagagctggagctggcccaccggtatttcagctaccttgccaaggcagga
gacaagatgaggttcgacctagtgcttgcctccactgaggccaggcaatgctctgacctg
ctgagtcaggcccagtaccacgtggctcgggccaggaagcaggacgaggaggagaaggag
atccgggccaagcaggatcaggagagggacttcctgcgccaacagatgcataaagaacag
gaggagaagagaaccaagcaggaagaggatcagaagaagctgctggagcagagagccatg
tacgtggagaagaccaagggtctgctctccttcgccgatggaatgaaggaggaaaggaaa
gagaagaggaaaggtggcggccgacgcaagaaagggggtgactttgatgagtttgtcaac
gatggctctgatgaggacctgccagtgaggaggaggaagaagaggaagggtggcagcggg
agtgaggaggagggccgcaagaagaggaggagacccaccaaagggggtgacgatggcagt
gatgacgaggagggaggctcacggcccaaaaagcaacgcaaacccagagcgggcggcaag
aagttccagaaggctgagcctgtgccaccgtctctcaaaggcaagatcaagtcgaaggcc
atcatctcgtcctccgactcttcatcagacgaggatggactgaaaattgctgaagaccga
aaccccagagacagtggttcaggctctgataatgagggcggccacaagaagcgcatcgcc
tccgacagtgagtctgacgggggcaggaaccgctctggcagcgaagctggaagcccccaa
cgctccggaaactcaggtagcgactcaggcagcgaccgtccagtgaagaggaagagagtg
cagcagcagtctgactcagagcagtctgataatgagagcaagaggagccgctctgggtcg
gacaacgagtcccgaccaggctcaccggccgcagcctctggctctgaagcaggctctccg
gcgggctctccggcaggctccccacaccgctccgacaacggatcagaaccagagggctct
gccgacaaggcctcaaaccacggctctggctctgacagcgactga
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