Coregonus clupeaformis (lake whitefish): 121555804
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Entry
121555804 CDS
T08357
Name
(RefSeq) ribonuclease ZC3H12A-like
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121555804
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
121555804
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
Regnase_1_C
UBA_6
zf-CCCH_2
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
121555804
NCBI-ProteinID:
XP_045071118
LinkDB
All DBs
Position
Unknown
AA seq
679 aa
AA seq
DB search
MDQAFPSLQTPASGPFEPDPGELQLRVDFFRKLGYSPMEVRDALLKLGLSTDTNSVLGEL
VSSGASTGTSNSTIPESGEDTTGPISHTGSSMASSRTHGPQRDRPVSSLEDRRDTDSGLK
PIVIDGSNVAMSHGNKEVFSCRGIELAVIYFLDRGHSTVIVFVPSWRKEQPRPDVPITDQ
HILVELEKKKIVVFTPSRRVGGKRVVCYDDRFIVKLAYESDGVIVSNDTYRDLQGERPEW
KRCIEERLLMYSFVNDKFMPPDDPLGRHGPSLENFLRKKPLLPEHKRQLCPYGKKCTYGV
KCKFYHPERTHQSHCSLADELREKARLSSVKEDRNPMMSHLRGPKSDPGPFPSYSLENDL
EHRLTLEHRGSLREGPKSQVTENMLLYWDGPRSSRNQQARSPTAVGQGQMDWPSMPNMPS
MLPPSTTSDLPYASISHERLDSGFGSYESQSQYSDVSQGHSKAFRPRQQQQQQGFPSGSR
HPGMHPERLAQDSPRSCRCCFHLAPSTGPQQQHHSNPLQTHSQSQPRYDTYSPPLFPPNM
HHQHHYSLPCNFQQGGVGAHHFHPHQHPQKYCSDPFHCGVPQARASCSLPPGPHLHHPPT
PHKAPHSCSSYGDQQEHHSWAQPPPPSVFDPEREELRKKLQAIFNPHQVDSVMGMFPHLM
DAQKLAAEILNLKSQGGAF
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggaccaggcctttcccagcctccagaccccagcctcgggtccatttgaacccgaccca
ggagagctccagctcagagtggacttcttcagaaagttgggctactcccccatggaggta
cgggacgccctgctgaagctaggcctgagtacagacaccaactctgtactgggggagctg
gtcagcagcggagccagcactggtacttctaactcaaccatccctgagagtggtgaagat
actactggccccataagccacacaggctccagcatggcctcctctaggacccatggcccc
cagagagacagaccagtctcatcactggaagacaggagggacacagacagtggactgaaa
cctatcgtcattgacggcagcaatgtggccatgagtcatggtaacaaggaagtgttctcc
tgtagaggaattgagttggcagtgatctatttcctggatagaggtcactcaaccgtcatt
gtgtttgtgccctcctggcgcaaggagcagcccaggcctgatgtccccatcacagaccaa
cacattctagtggagctggagaagaagaagatagttgtcttcactccctcgagacgcgtc
ggtggtaaacgggtggtctgctatgatgaccgttttatcgtgaagctggcctacgagtcg
gacggtgtgatcgtgtccaacgacacctatagggacctccagggagagcgtccggagtgg
aagcgctgtatcgaggagaggctgctcatgtactctttcgtcaatgacaaattcatgcct
ccagatgacccgcttggtcgtcatggtcccagtctggagaacttcctgaggaagaagcct
ctgctgccagaacacaagcgccaactctgtccttatggtaaaaagtgcacctacggcgta
aagtgtaagttttaccacccagagcgcactcaccaatcccactgctcgttggctgacgag
ctcagggagaaggccaggctctcctcggtaaaagaggaccggaatcccatgatgtcacac
ctgaggggccccaagtccgaccctggcccctttccctcctattctttggagaacgacctg
gagcacaggctgacattggagcaccgcggttccctgagggagggtcccaagagccaagta
actgagaacatgttgctgtactgggatgggccacgctccagtaggaaccagcaggcccgc
agccccacagcagtaggccaaggacagatggactggcccagtatgcccaatatgcccagt
atgctccccccctccactactagtgacctcccctatgccagcatctcccatgagcgcttg
gactctggttttggctcctatgagagccagagccagtactcagatgtgtcccaaggccac
agcaaggccttcaggcccaggcagcagcagcaacagcagggcttcccctctggttccaga
catccaggcatgcatccagagaggctggcccaggacagcccccggtcctgcaggtgttgt
ttccatttggctccctccacaggtccccagcagcagcaccacagcaacccactacagacc
cattcccaatcccagccaaggtatgacacctactcgccccctctgttcccacccaacatg
caccaccagcaccactacagcctcccctgcaacttccagcaaggcggggtgggggcacac
catttccacccccatcagcacccccagaagtactgttcagaccccttccattgcggggtc
ccccaggctagggcgtcctgtagcctcccccccggcccccacctccatcacccccctacc
ccgcacaaggccccccactcatgctcctcttacggggatcagcaggaacaccactcctgg
gcccagccacctccaccttctgtctttgacccagagagagaggagctccgtaagaaactg
caggccatcttcaacccccaccaggtggattcggtcatggggatgttccctcacctgatg
gacgcccagaagctggctgcagagatcctcaacctcaaatctcagggaggggccttctga
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