KEGG   Coregonus clupeaformis (lake whitefish): 121555832
Entry
121555832         CDS       T08357                                 
Name
(RefSeq) probable histone deacetylase 1-B isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03082  ATP-dependent chromatin remodeling
cclu03083  Polycomb repressive complex
cclu04110  Cell cycle
cclu04330  Notch signaling pathway
cclu04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    121555832
   03083 Polycomb repressive complex
    121555832
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    121555832
   04350 TGF-beta signaling pathway
    121555832
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    121555832
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cclu03036]
    121555832
Enzymes [BR:cclu01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     121555832
Chromosome and associated proteins [BR:cclu03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     121555832
   HDAC complexes
    Sin3A-HDAC complex
     121555832
    BRAF-HDAC complex
     121555832
    REST complex
     121555832
    SHIP complex
     121555832
    MiDAC complex
     121555832
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     121555832
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    121555832
  Chromatin remodeling factors
   NuRD complex
    121555832
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 121555832
NCBI-ProteinID: XP_041725612
LinkDB
Position
8:60721799..60735618
AA seq 483 aa
MALSSAGGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHK
ASGEEMTKYHSDDYIKFLRSIRPDNMSEHSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSV
AGAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIH
HGDGVEEAFFTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYE
AIFKPVMAKVMEMFQPSAVVLQCGADSLSGDRLGCFNVTIKGHAKCVEYMKSFNLPLLML
GGGGYTIRNVARCWTYETAVALDCIIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDY
LEKIKQRLFENLRMLPHAPGVQMQPIPEDAPHPDSGDEEDEDPDKRISIRAHDKRIACEE
EFSDSEDEGQGGGGRRNAANHKKTKRVKTEEKEKEAEEKDVKEEKDPEEKMDTTGPKEET
KTS
NT seq 1452 nt   +upstreamnt  +downstreamnt
atggcgctgtcgtctgctggaggaacaaagaagaaagtttgctattattatgatggcgac
gtgggtaattattactatggtcagggtcatcccatgaaaccccacaggatccgtatgacc
cacaacctcctgctcaactacggactgtacaggaagatggagatatatagacctcacaag
gccagtggagaggagatgaccaagtaccacagtgacgactacatcaagttccttcgttct
atccggccagacaacatgtcagaacacagcaagcagatgcagagattcaatgtaggagag
gactgcccagtgtttgacggcttgtttgaattctgtcagctctcaacagggggctctgtc
gcgggggcagtgaagctgaacaagcagcagacggacatcgccatcaactgggccggagga
ctccatcacgccaagaagtccgaggcctctgggttctgctacgtcaacgacatagtcctc
gccatcctggagctgctgaagtaccaccagagggtgttgtacatagacatcgacattcac
catggagacggagtggaagaggctttcttcaccacagaccgggtcatgactgtctccttc
cacaagtatggagaatacttccctggcactggagacctgagggacattggagcaggaaag
gggaagtactatgctgtaaactaccctctcagagacggcatcgatgatgagtcttatgaa
gccatcttcaaacctgtgatggctaaagtgatggagatgttccagcccagtgcagtggtg
ttgcagtgtggagcggactcactctcaggagaccgactgggctgcttcaacgtcaccatc
aaaggccatgctaagtgtgtggagtacatgaagagtttcaacctgcctctgctgatgttg
ggaggaggaggttacaccatccgtaacgtggcccgctgctggacctacgagaccgccgtg
gctctggactgcatcatacctaacgagctgccatacaatgattactttgagtactttggc
cctgacttcaagctccacatcagcccgtctaacatgaccaaccagaacaccaatgattac
ctggagaagatcaaacagaggttgtttgagaacctgcgcatgctgccccacgccccgggg
gtccagatgcagcccatcccagaagacgctccacacccggactctggcgatgaagaggac
gaggaccctgacaaacgcatctccatcagggcccatgataagaggatagcctgtgaagag
gagttctctgactctgaggatgagggacagggaggaggaggaaggcgcaacgctgccaac
cacaagaagaccaaacgagtgaagactgaggagaaggagaaggaggcagaggagaaggac
gtgaaagaggagaaggatccagaggagaagatggacacaacagggccaaaagaagaaacc
aagacgtcttga

DBGET integrated database retrieval system