Coregonus clupeaformis (lake whitefish): 121555969
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Entry
121555969 CDS
T08357
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121555969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121555969
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121555969
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121555969
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
121555969
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_3
zf-CCCH_2
zf-CCCH_12
zf-CCHC
zf-CCCH_4
zf-CCCH_RBM22
zf-CCCH_DUS3L
Nab2-like_zf-CCCH_
zf-C3H1
Motif
Other DBs
NCBI-GeneID:
121555969
NCBI-ProteinID:
XP_045072715
LinkDB
All DBs
Position
Unknown
AA seq
278 aa
AA seq
DB search
MQDLIATVDHIKFDLEIAVEQQLGAQPLPFPGMDIRGCGVCEFFMRAACLKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPDCRHRHTRRVICVNYLVGFCPEGRACKFMHPRFELPMGATEQPP
LPAQILGHQKPLPSLGRSSLSLIQLTNPGGGAGHHQQHHHHQRQPYSSGPSMHQHHNNMG
GGNRGPRPLDQVTCYKCGEKGHYANKCTKGHLAFLSGQ
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgcaggacctgatagccaccgtggaccacatcaagttcgacctagagatagctgtggag
cagcagctgggggcgcagcctctccccttccccgggatggacatccggggctgcggtgtg
tgtgagttcttcatgagagcagcctgtctcaaaggtgggatgtgtccgttccgtcacatc
agtggggagaagacggtggtttgtaaacactggctcagaggactctgtaagaagggagac
cagtgtgagtttctccacgagtacgacatgaccaagatgccggagtgttacttctactcc
aagttcggagagtgcagtaacaaggagtgtccgttcctccacatcgacccagagtctaag
atcaaagactgcccctggtatgacagaggcttctgcaaacatggtccagactgcagacat
cgccacaccaggagagtgatctgtgtgaactacttggttggtttttgtccagagggccgc
gcctgtaaattcatgcacccgcggtttgagctgccgatgggagccacggaacagcctccc
ctaccagcacagatactgggtcaccagaagccgctgccttcgctcggccgctcgtccctg
tcactcatccagctgaccaatcccgggggaggggcgggtcatcaccagcagcatcaccac
catcaacgccagccgtactcctctggtcccagcatgcatcagcaccacaacaacatggga
ggagggaacagggggccgcgtccgttagaccaggtcacctgctacaagtgtggtgagaag
ggtcactatgccaacaaatgcaccaaaggacacctggcgttcctcagtggacaataa
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