Coregonus clupeaformis (lake whitefish): 121556006
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Entry
121556006 CDS
T08357
Symbol
npas4l
Name
(RefSeq) neuronal PAS domain-containing protein 4-like
KO
K26457
neuronal PAS domain-containing protein 4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121556006 (npas4l)
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
121556006 (npas4l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_NPAS4
PAS_11
PAS_3
PAS
PAS_9
PAS_2
PAS_4
Per3-like_PAS-A
HLH
Motif
Other DBs
NCBI-GeneID:
121556006
NCBI-ProteinID:
XP_041725809
LinkDB
All DBs
Position
Unknown
AA seq
857 aa
AA seq
DB search
MTVCCESCESPGSGERCSSPRSAHLFTRETETFLGLSKRFRSTKGASKARRDQINSEIRN
MRTLLPIPQEDQDRLSYLHSMAVITAYIRKSFLYQGLSVDQSCLSSSSSYPLYETFLPAL
HGFILVLSSQGRLVYVSENVSDYLGLSMVDVLQGDTFYDLVESQDVETVRSHLETGSTTS
TGRSFVCRMHTSKAFRLEYGNCCSIMVRGRYQTVPQSPQSTPTSSPARSQSGPPVERVFL
ALCTPTVNRLGNITSCSSSFTSLHRPDMSFSHLDDSVLLYLGYSSEELIGQSWYSLLHPE
DLSLSAYSHKSLMQADVGSQMEMVLRLQHSNLSWSWIYTRATKHSGNEEVSCSNHIISET
EAMYLRKKIHSDAFRASPPQPYCPSPTPQPTQGCCPTRDLKRQRAFSQYSGISESETRSK
TSRRQRAESNAVFYVTSGSSSSQASPVTFFSTPPYSPTSSHYSSSSNSSHSPTQQDDTSS
DSLLDVYGYTENITSYHCPEVGTGVGTGVGTGVGTGVGTGVGTGVGTEVGTEVGTEVGTG
VGTGSSCKLSPFRSFQPGSEQSFHQGVFSQTDALSPQSCPSSPQYDYPACSADARLVPDC
LSVSNLLESSADCPITIHTEDYSLSIQPQDGATSPYQSQQIHHVPQTVSPPIGGLLTPNP
SPTSDLSFLYNDRDQVEISILAQQISSLASSFDLFNTLSPIQTQPQPSSEPLPWAQHPGH
SPVPLHIKPELVLDEGVFDSLLKDLSMVQGPGSLSHCYQPQDPSTLALSSLVDPLPMEQS
SLSLSLPLEHSSLSLSIPLEHSSSLSLSFPLDPFHPANMDPFFLRTSCHNQTSELHQLNH
YLPHNLHQDGLVEESMY
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgacggtttgttgtgagtcgtgtgaaagtccagggagcggtgagcgctgctcctctccc
cggtccgctcatctcttcacccgggagacagaaaccttcctgggactcagcaagagattc
aggtccactaagggggcgtctaaagccaggagggaccagatcaactctgagatcaggaac
atgagaactctgctcccaatccctcaggaggaccaggacagactgtcatacctccacagt
atggcggttatcacagcgtacatcaggaagagctttctgtaccagggattatcagttgat
cagagttgtctctcctcttcctcctcctatcctctgtacgagaccttcctcccagccctg
catggtttcattctggtcctctcctcccagggcaggctggtctacgtctccgagaacgtc
tctgattacctggggctctccatggttgatgtccttcagggagacaccttctatgacctg
gtagagagtcaggacgtagagactgttagatctcacctggagacaggcagcacaacatca
actgggaggagttttgtgtgtcggatgcacacctccaaggccttcagactagagtatggg
aactgctgttctataatggtccgaggacgctaccagaccgtcccacaatccccccagtcc
acccccacgtcctccccagcccgtagccaatctggcccccctgtggagagggtgttcttg
gctctttgcacccccacagtgaaccgcctgggcaacatcacctcctgctcctcctccttc
accagcctccacagaccagacatgagcttcagtcacctggacgacagtgttctgttatac
ctgggctactcgtcggaggagctgattggtcaatcgtggtacagcctcctccaccctgaa
gacctctccttgagtgcctactcacataagagtctgatgcaggcagacgtgggcagtcag
atggaaatggttctgaggctccaacacagcaacctctcctggtcctggatctacactaga
gccactaagcattctgggaacgaggaagtgagctgcagtaaccacattatcagtgaaaca
gaagccatgtatctgagaaagaagatccacagcgatgctttcagagcctctcctcctcag
ccctactgcccctctcccaccccccagccgacccagggctgttgccccaccagggacttg
aagagacagagagcattcagccagtacagtgggatatccgagagtgagaccaggtctaag
accagcaggagacagagagcagagtctaatgctgtgttctacgtgacatcaggtagctcc
tcctcccaggcctcacctgtcaccttcttctccacccctccctacagccccacctcctcc
cactacagctcctcctccaactcctcccactctccaacacagcaggacgacaccagctct
gactctctgttggatgtgtatggctacacagagaacataacctcctaccactgccctgag
gtagggactggggtagggactggggtagggactggggtagggactggggtagggactggg
gtagggactggggtagggactgaggtagggactgaggtagggactgaggtagggactggg
gtagggactgggtcttcctgcaagctctccccctttaggtccttccagcccggctcggag
cagtccttccaccagggtgtcttcagccagaccgacgccctctctcctcagtcctgccct
tcttctccccagtatgattacccagcatgctctgctgatgccaggttggtccctgactgt
ctgtctgtatcaaacttgttagagagttcagcagactgccccatcaccatccatactgaa
gactacagcctctcaattcagcctcaagatggcgccaccagtccataccagagccaacag
atccaccatgtaccccagactgtctctcctcctattggaggcctgctgacccctaacccc
tccccgacctccgacctctccttcctctacaatgacagagaccaggtagagatcagtatc
ctagcccagcagatctcctctctggcctccagcttcgacctgttcaacaccctgagcccc
atccagactcagcctcagcccagctcggagccccttccctgggcacagcacccaggtcac
tcccctgtccccctccacatcaagccagagctggtcctggatgagggagtgtttgatagt
ctcctgaaggatctgagcatggttcagggacctgggagtctgtctcactgctaccaacct
caggacccctcaaccctggctctgtcctctctagtggaccctctacccatggagcagtcc
tccctctcgctctccctccccctggaacattcctccctctcgctctccatccccctggag
cactcctcatccctctctctctccttccccctggaccccttccacccagctaacatggat
cccttctttctgaggacaagctgtcataatcagacctctgagttgcatcaactcaaccac
tatctgccccacaacctccatcaagatgggcttgttgaagaatccatgtactga
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