Coregonus clupeaformis (lake whitefish): 121556358
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Entry
121556358 CDS
T08357
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 47-like isoform X1
KO
K11857
ubiquitin carboxyl-terminal hydrolase 47 [EC:
3.4.19.12
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cclu01002
]
121556358
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121556358
Enzymes [BR:
cclu01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
121556358
Peptidases and inhibitors [BR:
cclu01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
121556358
Ubiquitin system [BR:
cclu04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
121556358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP47_C
UCH
UCH_1
Ubiquitin_2
Motif
Other DBs
NCBI-GeneID:
121556358
NCBI-ProteinID:
XP_045069773
LinkDB
All DBs
Position
Unknown
AA seq
1404 aa
AA seq
DB search
MEMVPSEENQLVPKEGMFWSCRQSIFDEMMKRFSQQIENAAEEPRVLCIVQDTTNAKTVN
ERLTLNLPASTTLSKLFEDVAHKASYVNGTFDLAWGKTGDMGSLEPSSEMSLTESGFEPG
KRNFLQLTDKDGEQPQIASDESGTADSSGLDDGSQERFIGPLPRDCTVGCSSDYSSPSYS
YSSILNKSDTGYVGLVNQAMTCYLNSLLQTLFMTPEFRNALYNWEFEESDEDPVTSIPYQ
LQRLFLLLQTSKKRAIETTDVTRSFGWDSSEAWQQHDVQELCRVMFDALEQKWKQTEQQQ
FSPLTADLINQLYQGKLKDYVRCLECGYESWRIDTYLDIPLVIRPFGASQAYGSVEEALQ
AFVQPETLDGANQYFCERCKKKCDARKGLRFLHFPYLLTLQLKRFDFDYTTMHRIKLNDR
MSFPEELDMGPFIDVEDEKSPQTESCTDSGAENEGSCHSDQMSNDFSTDDGVDEGICLDS
ASSTERVLKPKVPSLNTSSLTFELFSVMVHSGSAAGGHYYACIKSFSDGQWYSFNDQHVS
KITQEDIRKTYGGSSGSRGYYSSAFASSTNAYMLIYRLKDPSRNAKYLDCDDFPEHIKHL
VQREKESEEQEKRQREIERNTCKIKLFCMHPVKMRTMMENKLEVHKDKTLREATEMAYKL
MDLEEVVPLDCCRLVKYDEFHEYLERSYEGEEDTPMGLLLGGVKSSYMFDLLLETRRPEQ
VFQPYKPGEVMVKVHVVDLKTETIAPPVSIRAYLNQSITEFKQLIAQTTELSAETMRVVL
ERCYNDLRLLYVPNKTLKAEGFFRSNKVFVESSESPDHQVTFTDSLLWKLLDRHGNTIRL
FVSLPVQSPGTNRTICQNVGGDPEECSEGSKGNKKSVETILEESTEKLKNLSLQQQQGSQ
QGSSTSDSQKSSDTSDFEHIESPSPSQEPDSASSISAVVAVDNRELENRIRVASGGGAYS
DPETQFLGEERSDSEVNNDRSTSSVDSDILSSSHSSDTLCNADSGPIQLANGLDSHSITS
SRRSKANEGKKETWDTAEEDSGTDSEYDENGKSKVESYYLYFRAEPYAQEEGSGEGGQKC
VLVHVDKRITLSAFKQNLEPFVGVTSTQFKVFRVYANNQEFESVRLNETLSSFSDDNKIT
IRLGRALKKGEYRVKVYQLLVNDAEPCKFLVDTVFAKGMTVKQSKEELMPQLKDQCNLDL
NIDKFRLRKKTWKNPGTVFLDYHVYEEDINISSNWEVFLEVLDGPEKMKSMSQLAVLTRR
WTPAQMKLEPFQEVVLESSSVEELKEKLSEISGIPLENLEFAKGRGTFPCDISVLEIHQD
LDWNPKVSTLNVWPLYICDDGAVVFYRNSTEEPMEQSEDERNELMKRESSRLLKTGHRVS
YSPRKEKALKIYLDGGPVKDLGQD
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggtgcccagcgaagagaaccagctcgtacccaaagagggtatgttttggagt
tgcaggcagagtattttcgatgagatgatgaagaggttttctcagcagatagagaatgcg
gcggaggagcccagagtgctgtgcatagtccaggacactaccaatgctaagacggtcaat
gagaggctcaccctcaacctgccagcctccaccaccctctccaaactctttgaggatgtg
gcccacaaggcgagctatgtgaacggcacctttgacctggcatggggcaaaaccggggac
atggggtcgctggaacccagcagtgagatgtccctcactgagtctgggttcgagcccggg
aagaggaacttcctccagctcacagacaaggacggagagcagcctcagattgcatcggat
gagtcggggacagcggacagcagtggtctggatgacggctcccaggagcgctttatcggc
cccctgcccagagactgcacggtgggctgcagcagcgactacagcagccccagctactcc
tactcctccatcctcaacaagtcagacacaggatatgtgggtttggttaaccaggccatg
acctgctatttgaacagccttctacaaacgctgtttatgaccccggagttcagaaatgca
ctgtacaactgggagtttgaggagtcagacgaggacccggtcaccagcatcccttaccag
ctacagaggctgtttttgctgctgcagaccagtaagaagagggccatcgagaccaccgac
gtgacccgcagcttcggctgggacagcagcgaagcctggcagcagcatgacgtccaggag
ctgtgtagggtcatgtttgatgccctggagcagaaatggaagcagacagagcagcagcag
ttttctccacttacggctgacctgattaaccagctgtaccaggggaaactgaaagactat
gtgcgctgtctggagtgtggctatgagagctggaggatcgacacctacctggacatccct
ctggtcatcagaccctttggggccagccaggcttatggcagcgtggaggaggctctgcag
gcctttgtccagccagagactctggacggggccaaccagtacttctgtgagcgctgcaag
aaaaaatgtgacgcccgtaaggggctgaggtttctgcactttccctacctgctgactctg
cagctgaagcgttttgactttgactataccactatgcaccgcatcaaactcaacgaccgc
atgtccttccctgaggagctggacatgggtcccttcattgacgtggaggacgagaaatct
cctcagacggagagctgcactgacagcggggcagagaatgagggcagttgccacagcgac
cagatgagcaacgacttctcgacggacgacggtgtggatgagggcatctgcctggacagc
gccagcagtactgagagggtcctgaagccaaaggtacccagcctcaacactagttcattg
acctttgagctgttctcggtcatggtccattcgggcagcgctgcaggtggccactactat
gcctgcattaagtccttcagcgatggccagtggtacagtttcaatgaccagcacgtcagc
aagatcacccaggaagacatcaggaagacatacggagggtcctcagggagcagaggctat
tactccagtgcctttgccagctctacgaatgcgtatatgctgatttataggttgaaagac
ccctcaaggaatgcaaagtatctggattgtgatgacttccctgagcacataaagcatctg
gtccagagggagaaggagtctgaggagcaggagaaaagacagagggagatcgagcgcaat
acctgcaagatcaagctgttctgcatgcatccggtgaagatgaggactatgatggagaac
aagctggaagtgcacaaggacaagacgctcagagaggcaacagagatggcctacaagctc
atggatctggaggaggtggtcccactggactgctgtcgcctggtcaagtacgatgagttc
catgagtacctggagcgctcgtacgagggcgaggaggacacccccatggggctgctgctg
ggtggggtcaagtcctcctatatgtttgacctgctgctggagacccgcagaccagagcaa
gtcttccagccctacaaacccggagaggtgatggtgaaggttcacgtggtggatctgaag
actgagactatcgcccctcccgtcagcatcagggcctacctaaaccagtcaatcactgag
ttcaagcagctcattgcacagaccacagagctctcagccgaaaccatgcgtgtcgtcctg
gagcgttgctataatgaccttcggcttctctacgtgcccaacaagacactgaaagcagag
ggtttcttcaggagcaacaaggtttttgtggaaagctctgaatccccagatcaccaggtc
actttcactgattcgctcttgtggaaactgctggatcgccatgggaacacaatccgcctg
tttgtctcgctgcctgtgcaatcccccggcaccaacagaactatttgccaaaatgtgggc
ggcgaccccgaggagtgctctgaggggtcaaagggcaacaagaagtctgtagagaccatc
ctggaggagagcacagagaagctgaagaacctgtccctccagcagcagcagggctcccag
cagggctccagcaccagtgacagccagaagagctcagacaccagcgacttcgagcacatc
gagtccccctcaccctctcaggagccagactctgcctcctccatatccgctgtcgttgca
gtcgacaaccgcgagctggagaaccggatccgggtggctagcggcgggggggcctactct
gacccggaaacccagttccttggggaggagcgctcggactctgaggtgaacaatgaccgc
agcacgagctcagtagacagtgacatcctgagctccagccacagcagtgacacgctgtgc
aacgcagacagcggccccatccagctggccaatggcctggactcacacagcatcaccagc
agtcgccgctccaaggccaacgagggcaagaaggagacgtgggacacggccgaggaggac
agcggcacagacagcgagtatgatgagaacgggaagagcaaggtggaatcatattacctc
tacttcagagcagaaccatacgcacaggaggaaggctctggggaaggaggccagaaatgt
gtactggtccacgtagataagaggataactctgtcagcgttcaaacagaacctggagcct
ttcgtgggggtcacctctacccagttcaaggtgttccgcgtctacgcgaacaaccaggag
tttgagagtgtacggctcaacgagaccctctcctccttctctgacgacaacaagataacc
atacgattaggcagagcactaaagaagggcgagtatcgggtgaaagtctaccagctacta
gtgaatgacgcagagccctgtaagttcctcgtggacacagtgtttgctaagggcatgact
gtgaaacagtccaaagaggagctaatgcctcagctgaaagaccaatgcaacctggacctc
aacatcgacaagttccgtctcaggaagaagacgtggaagaacccagggacagtgtttttg
gactaccacgtctacgaggaggacatcaatatctccagtaactgggaggtcttcctggag
gttctagatggaccggagaagatgaagtccatgtcccagctggctgtgctgacccgccgc
tggacccccgcccagatgaagctggagcccttccaggaagtggttctggagagcagcagt
gtggaggaactcaaggaaaagctcagtgaaataagtggtattcctcttgaaaacctggag
tttgccaaggggcgcggaacatttccttgtgatatctcggtattggagatccatcaggat
ctggactggaaccctaaagtgtccacactgaatgtgtggcctctgtacatctgtgatgat
ggcgccgtggtcttctacaggaacagcacagaggagcctatggaacagtctgaagacgag
cgcaacgagctgatgaagagggagagcagccgcctgctgaagactggccaccgggtcagt
tactcacctcgtaaggagaaagcccttaagatctacctggatgggggcccggtcaaggac
ctggggcaggactga
DBGET
integrated database retrieval system
