Coregonus clupeaformis (lake whitefish): 121556464
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Entry
121556464 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: NLR family CARD domain-containing protein 3
KO
K22614
NLR family CARD domain-containing protein 3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cclu04054
]
121556464
Pattern recognition receptors [BR:
cclu04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
121556464
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NLRC4_HD2
FISNA
NACHT
NOD2_WH
PRY
SPRY
zf-C3HC4_4
LRR_6
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-RING_5
RING_XB3-XBAT31
zf-RING_2
LRR_4
zf-rbx1
DUF1512
Motif
Other DBs
NCBI-GeneID:
121556464
NCBI-ProteinID:
XP_045068408
LinkDB
All DBs
Position
Unknown
AA seq
1351 aa
AA seq
DB search
MSIKSDSSMAQPIRFRKGDCTTDPSPYQQERPASPVPSCMSIKSDSSMAQPIRFRKGDCT
TDPGPYQQERPASPVPSCMSIKSDSSMAQPIRFRKGDCTTDPGPYQQERPASPVPSCMSI
KSDSSMAQPIRFRKGDCTTDPSPYQQERPASPVPSCMSIKSDSSMAHPIRFRKGDCTTDP
GPYQQERPASPVPSCMSIKSDSSMAQPIRFRKGDCTTDPGPYQQERPASPVPSCMSIKSD
SSMAHPIRFRKGDCTTDPGPYQQERPASPVPSCMSIKSDSSMAQPIRFRKGDCTTDPGPY
QQERPASPVPSCMSMKSDSSMVQPIRFRKGDCTTDPGPYQQERPASPVPSCMSIKSNSSM
AHPIRFRKGDCTTDPGIKVLRDPVSITCGHGFCRQCITRYWEKPAPSGDYDCPQCRKRSR
TRPVLQQLSQPNKTRGSENSKTTCTLDDSLQRAIVNHKDSLKRRYECVIEGMEKAGNQTP
LNRIYTELYITEGESEGVNNEHEVWQLETASRTPNSHDTAIHCNDIFKPLPGQEKSIRTV
LTKGIAGIGKTVSVQKFILDWAEEKANQDVDIIFVLPFRELNLIKDLQYSLLRLLNGFHT
ELDIGNAKKLTACKAMFIFDGLDESRLPLDFQHNEKVSDVTQTSSVDVLLTNLIKGNLLP
SALLWITSRPAATNQIPPKCVDQVTEVRGFNDPQKEEYFRKRFSDEDLASRIISHIKTSR
SLHIMCHMPVFCWISAIVLEHMLSTDKRREMPTTLTEMSIHFLLIQTSLKNQKYHGRDEM
DQKELMESDKEILLKLGKLAFENLEKGNLMFYEEDLKECGIDVKEASVYSGVCTRIFKEE
SVLFQRVVYCFVHLSIQEFLSAVYMYHCYTTKNMDALKPFLKRKSRAASEELTLHELLKS
AVDKALESKNGHLDXFVRFLHGMSLESNQKLLRGLVTQTESSPDSVQKTIRSLKVMQRKN
ISPERCINLFHCLIEMKDHSVQEEIQAYLRSEKRSKNLTLSQCSALAYMLQISEEVLDVF
DLKVYKTSEEGRRRLLPAVRGCRKALLTGCKLTDTSCEVLASVLSSNPSHLRELDLSNTA
MKDSGVKLLSAGLGNPHCKLETLRLSGCLVTEEGCASLVSALKSNPSHLRELDLSYNQPG
DSGVRLLSAGLEDPHCRLEKLNVEHAGENTMKPGLRKYVCDLTLDLNTVNXDSSLSEENR
KVTWRREVQPYPDHPERFEDWDQVLCREGLTGRCYWEVEWSGIGVIIGVAYKGISRRGSD
DDCRIGHNDKSWSLDCYGNSYRAMHNNKFTTIDVRSSSSHRVGVYLDWPAGTLSFYRVSS
DTLTHLNTFHSTFTEPLYPGFHFYVDSSVSL
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
atgtccataaagagtgactcgtctatggcgcagccaatcagattcagaaaaggagattgt
accactgatccaagcccataccagcaggagagaccagcctcacctgtacccagctgtatg
tccataaagagtgactcgtctatggcgcagccaatcagattcagaaaaggagattgtacc
actgatccaggcccataccagcaggagagaccagcctcacctgtacccagctgtatgtcc
ataaagagtgactcgtctatggcgcagccaatcagattcagaaaaggagattgtaccact
gatccaggcccataccagcaggagagaccagcctcacctgtacccagctgtatgtccata
aagagtgactcgtctatggcgcagccaatcagattcagaaaaggagattgtaccactgat
ccaagcccataccagcaggagagaccagcctcacctgtacccagctgtatgtccataaag
agtgactcgtctatggcgcacccaatcagattcagaaaaggagattgtaccactgatcca
ggcccataccagcaggagagaccagcctcacctgtacccagctgtatgtccataaagagt
gactcgtctatggcgcagccaatcagattcagaaaaggagattgtaccactgatccaggc
ccataccagcaggagagaccagcctcacctgtacccagctgtatgtccataaagagtgac
tcgtctatggcgcacccaatcagattcagaaaaggagattgtaccactgatccaggccca
taccagcaggagagaccagcctcacctgtacccagctgtatgtccataaagagtgactcg
tctatggcgcagccaatcagattcagaaaaggagattgtaccactgatccaggcccatac
cagcaggagagacctgcctcacctgtacccagctgtatgtccatgaagagtgactcgtct
atggtgcagccaatcagattcagaaaaggagattgtaccactgatccaggcccataccag
caggagagaccagcctcacctgtacccagctgtatgtccataaagagtaactcgtctatg
gcgcacccaatcagattcagaaaaggagattgtaccactgatccagggatcaaggtgctg
agggatccagtctctatcacctgtggacacgggttctgcagacagtgcatcaccagatac
tgggagaaacctgctccttcaggagactatgactgtcctcagtgtagaaagagatccaga
acacggcctgtactacagcagctgagtcaacccaataaaacaagaggctctgaaaacagt
aagaccacttgcacactggatgacagcctgcagagagctatagtaaaccataaagacagt
ctgaaaaggaggtatgaatgtgtgatagaaggcatggaaaaagcagggaaccaaactccc
ctcaacaggatttacacagagctctacatcacagaaggagagagtgaaggggttaacaat
gaacatgaggtgtggcagctagagacagcatccaggacgccaaactcacatgacacagca
atccactgcaatgacatctttaaacccttaccaggccaagagaaaagcatcagaactgtg
ctgacgaagggcatcgctggcatcggaaaaacagtctctgtgcagaagttcatcctagac
tgggctgaagagaaggcgaaccaagatgtggatatcatatttgtgcttcctttccgggag
ctgaacttgattaaagatctccagtacagtcttctcagacttttaaatggcttccacaca
gaactagacataggcaatgcaaagaaactcactgcatgtaaagctatgttcatctttgat
ggtttggatgaaagcagacttccattggatttccagcacaatgaaaaggtgtctgatgtc
acccagacatcgtctgtcgatgttctgctgacaaacctcatcaaggggaatctgcttccc
tctgctctcctatggataacctcccgaccagcagcaaccaatcagatcccccctaagtgt
gttgaccaggtgacagaggtacgagggttcaatgacccacagaaggaggagtatttcagg
aagagattcagtgatgaggacctggccagcagaatcatctcacacataaagacatcaagg
agcctccacatcatgtgccacatgccagtgttctgttggatttctgcaatagtccttgaa
cacatgttgagtacagacaagaggagagagatgcccacgactctgactgagatgtcaata
cacttcctgctcattcagaccagcctgaagaaccagaaatatcatggaagagatgagatg
gatcaaaaggagctcatggagtcagataaggaaattcttctgaagctggggaagctggcg
tttgaaaatctggagaagggtaatctcatgttctatgaagaagacctgaaagagtgtggc
attgatgtcaaagaagcctcagtgtactcaggagtgtgcacacgaatctttaaagaagag
tctgtgttatttcagagagtggtgtactgctttgttcatctgagcattcaggagtttctc
tcagctgtctacatgtaccattgttacacaaccaagaacatggatgcactgaagcccttc
ctcaagagaaagtctagagctgcatctgaagagctaaccttgcatgagctgctgaagagt
gccgtggataaagccttggagagcaagaacggacacctggacncttttgtccgcttcctt
catggcatgtcactggagtccaatcagaaactcctacgaggtctggtgacacagacagaa
agcagtccagacagcgtccagaaaacaatccgatcccttaaggtgatgcagaggaagaac
atctcccctgagaggtgcatcaatctcttccactgtctgatagagatgaaagaccattca
gtacaggaggaaatccaagcgtacttgaggtcagagaagagatccaaaaacctcacactt
tctcagtgttcagcactggcctacatgctacagatatcagaggaggttctggatgtgttt
gacctgaaggtatacaagacatcagaggagggtcgtaggagactgctcccagctgtgaga
ggctgcaggaaagctctactcactggctgtaaactcacagacacatcctgtgaagtgttg
gcctcagttctcagttcaaacccctcacacctgagagagctggacctgagtaacactgcc
atgaaggattcaggagtgaagctgctctctgctggactggggaatccccactgtaaactg
gagactctgaggctgtcaggctgtctagtcacagaggaaggctgtgcttctctggtctca
gctctgaagtcaaacccctcacacctgagagagctggacctgagctacaatcaaccagga
gactcaggagtcagactgctctctgctggactggaggatccacactgcagactggagaaa
ctcaatgtggaacatgctggagagaacacaatgaaacctggacttagaaaatatgtctgt
gatctcacactggaccttaacacagtaaacnnagattcctctctgtctgaggagaacaga
aaggtgacatggaggagagaggtgcagccgtatcctgatcacccagagagatttgaggac
tgggaccaggtgctgtgtagagagggtctgactgggcgctgttactgggaggtagagtgg
agtgggataggggttattataggagtggcatataaaggaatcagcaggagaggaagtgat
gatgactgtaggattggacacaatgacaagtcctggagtctggactgctatggcaacagt
tacagagccatgcacaataataagttcactaccatagacgtccgctcctccagctcccac
agagtaggagtgtatctggactggccagccggcactctgtccttctacagagtctcctct
gacacactgacccacctgaacacattccactccacattcactgagcccctctatccaggg
tttcatttttatgttgactcctcagtgtccctgtaa
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integrated database retrieval system
