Coregonus clupeaformis (lake whitefish): 121556528
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Entry
121556528 CDS
T08357
Name
(RefSeq) transcription factor SOX-10-like
KO
K09270
transcription factor SOX7/8/10/18 (SOX group E/F)
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121556528
Transcription factors [BR:
cclu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121556528
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
Sox_N
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
121556528
NCBI-ProteinID:
XP_045069192
LinkDB
All DBs
Position
Unknown
AA seq
491 aa
AA seq
DB search
MSGEEHSLSEAELSPGGSDDGHSLSPAHSGATGGRDSPLIGPSQQLTGLSGADGGGEDGG
LVPKSEVDMDRFPIGIREAVSQVLDGYDWTLVPMPVRVNNGNKSKPHVKRPMNAFMVWAQ
AARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRKQHKKDYPEYKYQPR
RRKNGKLGTNGEGGEGAEGEGSHAQPHYKTLHLDVHSTGAGSPLADLHHHHHHPAGQGPP
TPPTTPKTELQSGKMAEGKREGGGGSGSSRGGGLGVGAEASGGPSSAGGKPHIDFCTMDI
GEISHDVMANIEPFDVNEFDQYLPPNGHPGVGQGGGVTPSSSATSYAYALAAASGHSAAW
LSKQQHQQASPSASDPTKAQIKSESGAGSHYAETSSSSSGTHVTYTPLSLPHYGSAFPSL
ASRAQFEYGEHQAPGPYYTHSSQAPGLYSAFSYMGPSQRPLYTTITDPSSVAQSHSPTHW
EQPVYTTLSRP
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgtctggagaggagcacagcctatccgaggcagagttgagtcccgggggctcagatgat
ggtcactctctgtcaccggcacactccggggccaccggcggccgggactccccgctcatc
ggtccgtcgcagcaactgacggggctttctggcgcagatggcggcggagaagatggtgga
ctagtgcccaagtcagaggtggatatggaccggttccccatcggcatccgcgaggcggtc
agccaggtgctcgatggatacgactggacgctcgtacccatgcccgtgcgagtaaacaac
gggaacaagagcaagccgcacgtgaagaggcccatgaacgccttcatggtgtgggcgcag
gccgcgcgccgtaaactggcggaccagtaccctcacctgcacaacgcggagctcagcaag
acacttggcaaactgtggaggctcctgaatgagagtgacaagaggcctttcattgaggag
gcggagcgactgaggaaacaacataagaaggactacccagagtacaagtaccagccccgc
agacgcaagaacggcaagctggggaccaatggtgagggaggggagggagcagagggggag
ggcagccacgcccagccccattacaagaccctccacctggatgtgcacagtacaggggct
gggtcccccctggccgacctccaccaccatcatcaccaccctgcaggtcagggcccgccg
acaccccccaccaccccaaagacagagctccagtctgggaagatggcggaggggaagagg
gagggtggaggtggctcagggtcctcccgtggaggaggcctgggggtaggagcagaggcc
tctggtggcccttcatcagcgggcgggaaaccccacatcgacttctgcaccatggacatc
ggcgagatcagccacgacgtgatggccaacatcgagcccttcgacgtcaacgagtttgac
caatacctgccgcctaacgggcacccgggggtcggccagggcggcggtgtcacaccaagc
tcctctgctacatcctacgcctacgccctggctgctgccagcggtcactcagccgcctgg
ctctccaagcagcagcatcaacaggcctccccctctgcctcagaccccaccaaggcccag
atcaagagtgagtctggagccgggagccactacgcagagacctcctcctcctcgtcagga
acccacgtcacctacacccccctcagcctcccccactacggatcagccttcccctcgctg
gcctccagggcccagtttgagtacggggagcaccaggcgccggggccgtactacacccac
tccagccaggccccggggctgtactcagccttctcctacatggggcccagccagaggccc
ctctacactaccatcactgacccctccagcgtggcccagtctcacagtcctacacactgg
gagcagcctgtctataccaccctgtcacggccatga
DBGET
integrated database retrieval system