Coregonus clupeaformis (lake whitefish): 121556840
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Entry
121556840 CDS
T08357
Symbol
puf60a
Name
(RefSeq) poly(U)-binding-splicing factor PUF60a isoform X1
KO
K12838
poly(U)-binding-splicing factor PUF60
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121556840 (puf60a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121556840 (puf60a)
Spliceosome [BR:
cclu03041
]
Complex A
U2 snRNP components
U2 related factors
121556840 (puf60a)
Complex B
121556840 (puf60a)
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Motif
Pfam:
RRM_1
RRM_7
DUF1543
Motif
Other DBs
NCBI-GeneID:
121556840
NCBI-ProteinID:
XP_041726674
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Position
18:complement(2773477..2848162)
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AA seq
528 aa
AA seq
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MAVAVSAGGEALMMENGQSSASKLGLPPLTPEQQEALQKAKKYAMEQSIKSVLVKQTLAH
QQQQLTNLQMASLTMGFGDPLSPLQSVAAQRQRALAIMCRVYVGSIYYELGEDTVRQAFA
PFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLSLEQMNSVMLGGRNIKVGRPSNIGQ
AQPIIDQLAEEARAFNRIYVASVHPDLSDEDIKSVFEAFGRIKSCTLARDPTTGKHKSYG
FIEYDKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPTTPGGLPPAAAVAAAAAT
AKITAQETVGSSVLGALAGPALLSQQLGGLPQAVMAAQAPGIITGVTPVRPALPVLPQVG
LVNPVLASPPVLVTSLVAAQEAKKKEVEEEEEALQDGTGQEPLSEQENMSISGSSARHMV
MQKLLRKQESTVMVLRNMVGPEDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEDDAEV
IVKIFVEFSMAAEMNKAIQALNNRWFGGRKVIAEVYDQERFDNSDLSA
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggcagtttctgcgggaggcgaggctctgatgatggagaatggacagagctcc
gcctcaaagctcggcctgccgcctctcacccctgagcagcaggaggcactgcagaaggcg
aagaagtatgccatggagcagagcattaagagtgtgctggtcaaacagaccctggcccat
caacaacagcagctcaccaacttacagatggcatcgttgacaatgggctttggagatccc
ctctcacctttacaatcggtagcggctcagagacagcgagcattagccatcatgtgccga
gtgtacgtgggctccatttactacgagctgggagaggacactgtccggcaggcctttgcc
ccgttcggccccatcaagagcatcgacatgtcctgggactctgttactatgaaacacaag
ggttttgcgtttgtggagtatgaggtgcctgaggcagcccagctatcccttgagcagatg
aactctgttatgctgggagggagaaacattaaggtgggacgaccgagcaacatcggacag
gcccagccgatcattgaccagctggcagaagaggcgcgtgccttcaatcgaatctacgtg
gcatctgtgcaccccgacctctcggacgaggacatcaagagtgtgtttgaggcgttcggc
cggatcaagtcatgcactctggcgagagaccccaccacggggaaacacaagagctacggc
tttattgagtatgacaaggctcagtcctcccaggatgcagtttcctccatgaatctcttt
gacctagggggtcaatacttgcgtgtgggcaaagcggtcaccccccccatgcccctgctc
actccgaccacacctggcggactcccccctgctgcagctgtggcggctgcagctgccaca
gccaaaatcactgctcaggagacggtcgggtcatcggtgctgggagcgctggctgggccc
gccctcctctctcaacagttgggtggcctgccccaagccgtcatggcagctcaggccccg
gggatcatcacaggggtaaccccagtgcggcccgctttgcccgtgttacctcaggtgggc
ctggtcaacccagtgctggcctcaccaccggtgctggtcacctctctagtggcagctcag
gaggccaagaagaaggaagtggaggaggaggaggaggccttgcaggatgggacgggccag
gagccgctgagtgagcaggagaacatgagcatctccgggagcagcgccagacacatggtc
atgcagaagttgctccgcaaacaagagtcgacggtgatggtgctgcggaacatggtaggc
ccagaggacatcgacgatgacctggagggtgaggtgactgaggagtgcggcaagtttggc
gcggtcaaccgtgtcatcatctaccaggaaaagcagggcgaggaggatgatgcagaggta
attgtcaagatctttgtggagttctccatggcggcggagatgaacaaggccatccaggca
ctcaataatcgctggtttggaggtcgcaaggtcattgccgaggtatatgaccaggagcgc
tttgacaacagcgacctatctgcataa
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