Coregonus clupeaformis (lake whitefish): 121556918
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Entry
121556918 CDS
T08357
Name
(RefSeq) E3 ubiquitin-protein ligase NHLRC1
KO
K10602
E3 ubiquitin-protein ligase NHLRC1 [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121556918
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121556918
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121556918
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121556918
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
zf-RING_5
zf-RING_UBOX
zf-C3HC4_3
zf-RING_2
zf-C3HC4_4
RING_XB3-XBAT31
zf-C3HC4
zf-RING_4
Prok-RING_4
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
121556918
NCBI-ProteinID:
XP_041726736
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All DBs
Position
28:complement(11543616..11545267)
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AA seq
415 aa
AA seq
DB search
MADVPVPPSSLRTEGILLREIHVNLLECKVCFEKYNPRQKERRPQNLSCGHVLCLECVRA
LSHPVLKKLECPFCRQLWDVDSTSHCQALTDLQDLLLSHSPRSPVPHQVRGGSGWVGGLG
SGALRLRSAFGGWGSLINPTGVAVFGSSGTMVVVHDGDRRVVVFGPQGRWLHGFGRRGRG
HGEVCHPVDVAVTPSGYVVVTDAGDGAVKVFTSRGSYVLEVRDSFQMPWGVDVDSCGHIL
VTDVQAGTLSQVVVDFARGVTLMNRAVITDLQRPKAVACCRVTGNIALVETLGLTTTQPP
NGPRPTRLTIFNKDFNVLSQIDSFTLSLGASVWPCVSAVAFDRDGDVIVIDSQRGLIWSL
GKFQNSLVLTPLVSEDLVRPVGLVATAQNTLIVLDSGDHAVKMYSVHSDAILVRK
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgttcctgttcctccttcctcactgagaacagaggggatcctcctgagagag
atccacgtcaacctgctggagtgtaaagtctgcttcgagaagtataacccacggcagaag
gaacgccggcctcagaacctgtcctgcggccatgtactctgtctggaatgtgtccgggcg
ctctcccaccctgtcctcaagaagcttgagtgccctttctgccggcagctgtgggacgtt
gacagcacctcccactgccaggcactgacagacctccaggatcttctgctctcccactcc
cccaggtcccctgtccctcatcaggtcagaggaggcagcggctgggtcggcggtctgggc
tctggagctctgcggcttcgctcggccttcgggggctgggggtccctgatcaacccaacg
ggggtggccgtgttcgggtcctctgggaccatggtggtggtacacgatggagacagaaga
gtggtggtattcgggcctcagggcaggtggctgcacgggttcggccggaggggtcgcggc
cacggagaggtgtgtcacccggtggatgtggcggtgactcccagcgggtatgtggtcgtg
acggatgccggggacggtgcagtgaaagtgttcacctccagggggagttatgttctggag
gtgcgggactccttccagatgccctggggggtggacgtggacagctgtgggcatatcctg
gtcactgacgtccaggccggcacgctctcccaggttgtggtggactttgcccgtggcgtg
actctgatgaaccgagcggtcataaccgacctccagcggcctaaggcagtggcctgctgt
cgggtgaccgggaacatcgccctggtggagacactggggctcaccaccacacaacctcca
aatggcccccggcctaccagactgacaatattcaacaaagactttaatgtcctctctcag
atagacagcttcactctgagcctgggggcctcggtgtggccctgtgtgtctgccgtggcc
tttgacagggacggggatgtgatcgtgatagactcccagcgggggttgatttggagtttg
ggaaagttccagaacagcctggtcctaacccccctggtcagtgaagacttggttcgcccg
gtggggctggtcgccacagcacagaacacactgattgttttagacagtggagaccatgca
gtgaagatgtattcagttcactcagatgctattctagtccgaaaatga
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