Coregonus clupeaformis (lake whitefish): 121557210
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Entry
121557210 CDS
T08357
Symbol
ciita
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cclu01001
]
121557210 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cclu04054
]
121557210 (ciita)
Enzymes [BR:
cclu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
121557210 (ciita)
Protein kinases [BR:
cclu01001
]
Serine/threonine kinases: Other
TAF1 family
121557210 (ciita)
Pattern recognition receptors [BR:
cclu04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
121557210 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
LRR_14
AAA_16
RsgA_GTPase
nSTAND3
Ribosomal_60s
VapE-like_dom
ABC_tran
DUF815
AAA_22
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
121557210
NCBI-ProteinID:
XP_045075695
LinkDB
All DBs
Position
Unknown
AA seq
773 aa
AA seq
DB search
MFQETEAGLSLASHYVDVRLVQRQILIGSGKNANKCLEKDLVVMGDTERRRGSLARSQVF
ESSAGAKPKRSIVLLGNAGMGKSTLIKKLCVDWSDGLLPQFDFVFLLDGKALTLPPEPTH
SLQSLLLHLSSSPLPCPHPQDVFNHVLSVPERVLVIFDGFEVVRDMEGLLQCPADDSRGG
TYSVRQLFSGLLQRRLLPGCSLLLSARPRGTVSGLLRRADSLLELSGFSPPDIERYLGQY
FSGHSQQAPAPAPVLAPVLAPAPEEEEEEEEEEENRYVLSELSGLAWQGVKGHSSLLTLT
LEHTIYVRLRVFGLRTGLVHSHWLRGGQGRDCDGDDISDDNILSWAHPFLQSFLGGVHLS
VSRCVSDRALLTQILPQPRGRRRPQGECLDLAQRFAVGLLFRNKAELRDLATLDTGAMSA
VVAKRAAVTSHLENLHPAELNPARLLEACHCVYETGDAHLVRQLVRNLPEVLSFQGVPLC
PVDAFVVWNLLDQCRTPRRRFCLGLEDTGLRITGLKLLTGLHNINSYRACIADTITLWEE
LEQSGEEELLKAAVSKLTLNPFRVTQVSHVQHLSTLVKIHTNRRLSDNLSDGVLGEGIPA
VRDLHKLEFELGPVNGPLALPKLLELLPALHSLQHLDLENSKLGDSGAEGLAEALSSLSS
LQIINLSQNCIGDHGLERLAPALSTLPSLHCLSLYSNVISDGGADSMAAVLPQMTSLSDL
DVKYNRFTALGAQSLASSLRDCPWIKSLGMWNACIPYGVLERLQQQDPRIQLL
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgttccaggagacggaggcgggccttagcctggcgtcccactatgttgacgtgcgattg
gtccagaggcagatcctgattggctcagggaagaacgccaacaagtgcctggagaaggat
ctggtcgtcatgggagacactgagaggaggcggggctcgctggccagaagtcaggtgttc
gagagctccgcgggggcgaaacccaaacgttccatcgtgttgctaggcaacgccggcatg
ggcaagagcacgctcatcaagaagctctgtgttgattggtccgacggcctcctgcctcag
tttgactttgtgttcttattggacggcaaggctctgaccctcccccctgagccgacccat
agccttcagtccctcctcctccacctctcctcctccccacttccctgtccccacccccag
gatgtcttcaatcatgtcctctctgtcccggagcgtgtgctggtgatattcgacggcttc
gaggtggtgcgcgacatggaggggctgctgcagtgtccagcggatgacagtaggggtggg
acctacagcgttagacagctgttctcaggcttgctccagaggaggctcctaccaggctgc
tctctgctcctctctgcccgaccgcgaggcaccgtcagcggtctgctgagacgggctgac
agcctcctggaactctctggcttctcccctccggacatagagagatacctgggacagtac
ttctctggacactcccaacaggccccagccccagccccagtcctagcccctgtcctagcc
ccagcccctgaagaggaggaggaggaggaggaggaggaggagaacaggtatgttctgtct
gagttgagcggtctggcctggcagggggttaaaggtcattcatctctcctcaccctgacc
ctggagcataccatctatgtcaggctgcgggtgtttggcctgaggactggactggtccat
tctcactggctgaggggggggcagggcagagactgtgacggtgatgacatcagtgatgac
aacatcctgtcctgggcccaccccttcctgcaaagcttcctgggcggggtccacctgtct
gtctccaggtgtgtgtctgaccgagccctgctgacccagattctaccacagcccaggggg
aggcgacggcctcagggagagtgtctggaccttgctcagcgattcgctgtcggcctgctg
ttccggaacaaggcggaactccgggatctggccaccctggataccggcgccatgagtgcg
gtggtggccaagcgagccgctgtgacgtcacacctggagaaccttcaccctgcggagcta
aaccctgccaggctcctggaggcgtgtcactgtgtttacgagacaggcgacgcccacttg
gtcagacagctggtgcggaaccttcccgaggttctgtccttccaaggggttccgctgtgc
cccgtcgacgcctttgtggtgtggaaccttctggaccagtgtagaacgccgaggaggagg
ttctgtctggggctggaggacacaggactgagaatcacagggctaaaactactaacaggt
ctccacaacataaactcctacagggcgtgtatcgctgacaccatcaccctgtgggaggag
ctagagcagagtggcgaggaggagcttctgaaagcggctgtgtctaagttgacccttaac
cctttcagagtcacacaggtgtcccatgtacaacacctgtctacactggtcaagatacac
acaaacaggagactgtctgacaacctgtcagacggtgtccttggggagggcatccctgca
gtcagagatctccacaagctggagtttgagttgggtccagtgaatgggcccctggctctc
cctaaactcctggagctgctgccggcactgcacagtcttcaacatctggatctggagaac
agtaaactgggggacagcggagcggaggggctggctgaagctctgtcgtctctctcctct
ctgcagattatcaatctgtctcagaactgtataggagaccatggactagagagactggct
cctgccctgtctaccctcccctcactgcactgtctcagtctgtacagtaatgtgatatca
gacgggggtgctgacagtatggccgctgttttacctcagatgacatcactcagcgacctg
gatgtaaagtacaacaggttcacagccctgggagctcagagtctggcttccagtctgagg
gattgtccgtggatcaagagtctggggatgtggaacgcgtgtattccctacggggtgtta
gagagactgcaacaacaggacccacggattcagctgctctag
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