Coregonus clupeaformis (lake whitefish): 121557525
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Entry
121557525 CDS
T08357
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018
RNA degradation
cclu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121557525
09123 Folding, sorting and degradation
03018 RNA degradation
121557525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121557525
03041 Spliceosome [BR:
cclu03041
]
121557525
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121557525
mRNA degradation factors
5'-3' decay
Lsm complex
121557525
Spliceosome [BR:
cclu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
121557525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
GPAT_C
Motif
Other DBs
NCBI-GeneID:
121557525
NCBI-ProteinID:
XP_041727059
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All DBs
Position
19:58855022..58864051
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AA seq
111 aa
AA seq
DB search
MADRNQDRNKEGEKKKKESIFDLSKYIDKQIRVKFQGGREASGVLKGFDPLLNLVLDSTI
EYLRDPDDQFKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDG
NT seq
336 nt
NT seq
+upstream
nt +downstream
nt
atggcggacagaaaccaggacagaaacaaggaaggagagaagaagaagaaggagagtatc
tttgacctgtcaaagtacattgataaacaaatccgtgtgaagtttcagggaggacgagag
gccagtggagttctgaaggggtttgaccccctgttgaacctggtattggatagcaccatc
gagtacttgcgggatcctgacgaccagttcaagctgaccgaggacacgcggcagctgggc
ctggtggtttgtagagggacgtccgtggtgctcatctgtcctcaggacggcatggaagcc
atccccaaccccttcatccagcagcaggacggatag
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