Coregonus clupeaformis (lake whitefish): 121557978
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Entry
121557978 CDS
T08357
Name
(RefSeq) collagen alpha-1(XVIII) chain-like
KO
K06823
collagen type XVIII alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cclu04147
]
121557978
00535 Proteoglycans [BR:
cclu00535
]
121557978
00536 Glycosaminoglycan binding proteins [BR:
cclu00536
]
121557978
Exosome [BR:
cclu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
121557978
Proteoglycans [BR:
cclu00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
121557978
Glycosaminoglycan binding proteins [BR:
cclu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121557978
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Fz
DUF959
CFAP143
DUF1554
Motif
Other DBs
NCBI-GeneID:
121557978
NCBI-ProteinID:
XP_045075485
LinkDB
All DBs
Position
Unknown
AA seq
1762 aa
AA seq
DB search
MSKMKLWLGFPLLLALSAGRLDAWFWNNDPDPTTQAPTKAPLLGKAGAGGQPKRGEENLA
GVGAEIINVADGIRKFVQTWDATPTTWTDGGVASPTTQTVNKEESGEGSGSGSVEGSGSE
TGSGSGSGSASGVGSGFGSGAESGVGSGTRSGSGSGSGLRESESSVIPTNLTGVVEDDLT
GVEGVKQGELKTNLSDITSHDHNGTCHLVPSDWPICISRGSKHFSLPNFLNHTSVEEVGI
VLREWAWLAKAGCHHGAEWFLCLLLVPRCPLPGQVPTKVPLLPCCSFCHVLQDSCWPALD
DGQLPVECNMLPDRDQEAGLRCPSCVSVSNRKAESGVTLLQLIGDLPPDESRTGPGGKPA
YYFGGLDGLTAAGQPALAHLPNPFYRDFSLVFQIIPSSPGVLFSITDASQKFMYVGVKLS
APDADGRNQRILFYYTEPDSEASYLAASFTVPSLDLDSWTKFSLSVFNDQVTFFMGCDAS
GKTVKLERSPDDMELDRGAGIFVGQAGGADPDRFEGAITELKVVGNPRSAELLCEDDDDS
DAASGDFGSGDGDRRETGQTVKVSSLSYHPPTLRPVPEPPLTSSVSDRLSETGDRNHQTS
VESRPGSGGQPGSTGSNGEKGDRGEKGSPGDRGPAGPKGDSGSLSSSASSSGSSSGGGER
GEKGDKGLKGSSGFGYPGSKGDRGVPGPPGPPGPTGPAAQVVRLGDGSVVQPVAGPMGPM
GPPGVKGPAGPQGPEGEAGDPGEDGKLGPAGPRGFPGTQGNSGVKGQKGDRGDGHPGPRG
PPGPPGPPGPGTGDRATFVDMEGSGGFPDLEKMQTLRGLPGPPGPPGPPGPSAGGVSPHG
SGSFGPPGPPGQDGAPGLPGPSGPPGRAGTPGPSSGEKGEAGDLGLPGPSGEKGSQGDPG
VPGQAGQGGLAGLPGPMGPIGPPGPPGPPGPSYPVRYGDGQGSGVTVSNGVPGVIGIPGP
QGPPGIAGLPGRSGLPGLSGEKGSEGARGRDGTPGMDGFPGKLGDKGERGDRGERGEPGR
EGGRPGPPGAPGPPGQIIYQTSGSFDGVLGGQGQGGPSLPGRAGFPGPMGPKGDTGEPGQ
PGYAAKGEKGEPGITIGPDGRPLYLGGPGSLPGDKGLPGPVGPPGPYGPAGLKGDIGMPG
RPGRPGLNGVKGEKGDSAGGYGYTGPPGPPGPPGPPGPAVPLDRFNTQRYDDVSRFYPDS
KGEKGDRGVPGIPGVPGLTSNFDIYTFKNEMKGERGDSGMKGEKGDPAGGYYGGGYGGQG
GQPGPPGLPGPKGESIIGPSGPQGPPGHPGRGYEGRQGNPGPPGPPGPPGSSSSPGAYRP
SQTISIPGPPGPPGPPGTDGHSSGVMVLRSYDTMTATARRQAEGTLVYLVDQTDFYIRVR
DGFRQIQLGPYIALPPDQGNEVAAVDPPPVVYYQPFNTATGHFSDSGTSTEQPPRQLDLH
QPQPEEQHPVYPDPRYPTHPDPRYPAQPDPRYPAQPDPRYPAQPDPRYPAQPDPRYPAQP
DPRYPAQPDPRYPSNSDPRYPSHTDPRYPSYTDRLHNPDPVQPVQPQPQPAPVPQYPVYS
DTRYPVTPQRRPRPPETPTHQHTSGPSIHLMALNAPQGGNMRGIRGADFLCFNQARAIGL
KGTFRAFLSSKLQDLYSIVRKSDRDSMPIVNLKDEVLFDNWEAIFSDSEGRVKDNVPIYS
FDGKDILTDGTWPDKMMWHGSTSRGHRQVDNYCETWRIGERALTGMASSLQGGQLLQQST
SSCHSSYAVLCIENSYIGQFKR
NT seq
5289 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagatgaagttgtggctgggctttccccttcttctggctctcagcgcgggtcgt
ctggatgcttggttctggaacaatgaccctgatcctactacccaagccccaacgaaggct
ccgctgctgggcaaggcaggggcaggaggacagcccaagagaggtgaggagaacctggca
ggggttggggcagaaatcatcaacgtggctgatgggatccgtaagtttgtgcagacgtgg
gatgcgaccccaaccacttggactgacggaggagtggcaagccctaccacacagacggtt
aataaggaggagtctggggaaggatctgggtctgggtctgtggaaggatctgggtctgag
acgggttcagggtcagggtcgggttcagcatctggtgtagggtctgggtttggatcgggg
gctgagtctggtgtaggttcagggaccagatcggggtcgggttcagggtcagggcttaga
gaaagcgaaagctcggttatccccactaacctaacaggggtggtggaggatgacctcaca
ggggttgagggggtgaaacagggcgaactaaagaccaacctatctgacatcacctctcat
gaccacaatggaacctgccacctcgtgccctctgattggccgatctgcatatccaggggg
tcgaagcatttctcgctgcccaacttcctgaaccacacctctgtggaggaggtgggcata
gtcctgagagagtgggcatggctggccaaggcggggtgccaccatggagccgaatggttc
ctctgtctcctcctggtgcccaggtgcccactgcctggtcaggtgcccaccaaggttccc
cttctgccctgctgcagcttctgccatgtcctgcaagacagctgctggccagccctggat
gatgggcaacttcctgtagagtgtaatatgctgcccgacagggatcaggaggcgggcttg
cggtgtccgtcgtgtgtgtcagttagtaatcggaaagcggagagtggtgtgactctactg
cagctgatcggagacctgcctcctgatgagtcccggaccggtccagggggaaaacctgcc
tactacttcggagggctggatgggctgaccgctgcgggacagccggccctggcccacctc
cccaaccccttctaccgagacttctccctggtcttccaaatcatcccctccagtcccggg
gtcctcttctccatcacagacgcctcccagaagttcatgtacgtgggggtgaagctgagc
gccccggacgctgacggcaggaatcagaggattctgttctactacacagagcccgactcg
gaggcctcgtacctagctgctagtttcaccgtgccctccctggacctagactcctggacc
aagttctctctgtccgtgttcaacgaccaggtgaccttcttcatggggtgcgacgcctct
gggaagacagtgaagttggagcgctcaccggatgacatggagctggacaggggggcgggc
atcttcgtgggtcaggcgggaggggcggaccctgacaggtttgagggggcgatcactgag
ctgaaagtggtgggcaaccctcgatcagctgagctactctgtgaagacgatgatgactcg
gacgctgcctcaggtgactttggcagtggggatggggacagaagagagacaggccaaact
gtaaaggtatcttctttatcctaccaccctccaactctccgaccggtgccagagccccct
ctgacgtcatcagtgagcgacaggctctcagagacaggtgacaggaatcatcagacctca
gtagagtccagaccagggtcaggaggtcaaccaggctctactggctctaacggggagaag
ggggacagaggggagaagggcagtccaggggacagaggtcccgctgggccaaagggggac
tcggggtctctctccagctctgcctcttcctctggctcctcatcaggcggaggagaacgt
ggagaaaagggagacaagggcctgaagggcagttctgggttcggttacccaggctccaag
ggggaccgtggcgtacctggtccccctggccctcccggccctacggggcccgctgcccag
gtggtgaggctaggggacggctctgtggtgcagccggtggccgggccaatgggaccgatg
gggcccccaggggtcaaaggaccagcaggaccccagggaccagagggagaggcgggggat
ccaggagaagatggcaaattaggacccgccggacccagagggttcccaggaacacaagga
aactcaggggtcaaaggacaaaagggggatcgtggtgatggtcacccaggacccaggggt
cctccaggaccacctggacccccaggcccagggacaggtgaccgcgcgacatttgtggat
atggaaggctcaggaggattcccagatttggagaaaatgcagactctccgtggtctacca
ggtccccccggccctccaggtccccctggcccctcagccggtggtgtcagcccccatggg
tcaggctcttttgggccccctggacctcccggacaggacggggcccctggcctaccaggg
ccctctggtccacctggtagagctggaaccccaggacccagtagtggagagaagggagaa
gctggtgatctaggtcttccagggcctagtggagagaagggttctcagggtgaccctgga
gtgcctggtcaggcagggcaggggggcttggccgggcttcctgggcccatgggaccgatt
gggccaccaggaccaccaggaccccccggaccttcctaccccgtgcgttatggtgacggg
cagggttctggagtgacggtgtccaatggtgttcctggagtgataggtattccaggacca
cagggtccgcccggaatcgctggccttcccggaagatctggtttgcctgggctatcggga
gagaaggggagcgagggagcgagaggacgggatggaacaccagggatggacggattccca
ggaaaattgggagacaaaggggagcgaggagacagaggggaaaggggtgagccaggacgt
gaagggggacgccctggacctccaggagcccctggcccaccgggacagatcatctaccag
acctcaggcagttttgatggggttcttgggggtcaaggacagggtggaccatctctgccc
ggccgggcaggattcccagggcctatggggccaaagggagatacaggagagcctggacag
ccaggctacgcagctaagggggagaaaggagaacctggtattaccattgggcctgatgga
agacccttgtacctaggagggccggggtctctgccgggagataaaggactcccgggacct
gtgggacctcctggtccctatggtccagctggtttaaagggagatatcggcatgccaggt
agaccgggccgtcctgggttgaatggtgtcaaaggagagaagggggattcagctggagga
tatggatacacaggtcctccaggaccacccggcccacccggaccccccgggccagcagta
cctctggacaggttcaacactcagaggtatgatgatgtctcacggttctatcctgactcc
aaaggagagaaaggtgatcgtggagtaccaggaatacctggggtaccaggtctcacgtca
aactttgacatctacaccttcaagaacgagatgaagggagagagaggagactctgggatg
aagggggagaagggcgacccagctggaggatattatggcggaggttacggtggacagggt
ggtcaacctggacctccaggacttccagggccaaagggagagtccatcatcggtccttca
gggccccagggccctccaggtcacccaggaagagggtacgaaggcaggcaagggaaccca
ggcccaccggggccccccggacctccaggatcatcctcctcacctggagcctacaggcca
tcacagaccatcagcatccctggacctccgggtcctcctggcccacctgggactgatgga
cactcctctggggtgatggtgctgaggtcatatgacacgatgacagccacggccagacga
caggcagaggggacgctggtgtatctggtcgaccaaacagacttttacatcagagtacga
gatggcttccggcaaatccagcttggaccatacatagctttaccccctgaccagggtaat
gaggtggcagctgtcgaccctcctccagtggtctactaccagcccttcaacacagccaca
ggccacttctccgacagtggcacctccacagagcaaccccccagacagctagacctccat
cagccacagcctgaggaacaacaccctgtttaccccgacccacgttacccgactcacccg
gatccacgctacccagcccagccagatccacgctacccagcccaaccggatccacgctac
ccagcccagccggatccacgctacccagcccagccggatccacgctacccagcccaaccg
gatccacgctacccagcccagccggatccacgctacccctcaaactcagaccccagatac
ccctcacacactgatccacggtaccccagttatacagaccgcctgcacaaccctgaccct
gttcagccggtccagccccagccccagccagcccccgtcccacagtacccggtttactca
gacacccgttaccctgtaaccccacaacgcagacccagaccccctgagacccccacccac
caacacacgtcaggcccaagcattcacctgatggccctgaacgccccccaggggggtaac
atgcggggtatcagaggggcagacttcctgtgctttaaccaggctcgggccatagggctg
aagggaaccttccgggctttcctctcctccaagctccaggacctttacagcatcgtccgc
aagtcagacagggatagcatgcccatcgtcaacctgaaggacgaggtcctgtttgacaat
tgggaggccatcttcagtgactcagagggcagagtgaaggacaacgtacccatctactcc
ttcgatggcaaagacatcctcacagacggcacatggccagacaagatgatgtggcacggt
tcgacgagcagggggcaccgccaggtggataactactgtgagacgtggcgtataggggag
cgggcgctgacgggcatggcctcctctctacaggggggccagctcctccaacagagcacc
agcagctgccacagctcctacgccgtgctctgcatcgagaacagctacatcggacagttc
aagagatag
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integrated database retrieval system
