Coregonus clupeaformis (lake whitefish): 121557980
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Entry
121557980 CDS
T08357
Symbol
obsl1a
Name
(RefSeq) obscurin-like protein 1a isoform X1
KO
K19574
obscurin-like protein 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121557980 (obsl1a)
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Centrosome formation proteins
3M complex
121557980 (obsl1a)
BRITE hierarchy
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
V-set
Izumo-Ig
Ig_4
Ig_6
C2-set_2
C1-set
VEGFR-1-like_Ig-like
fn3
EFG_III
Motif
Other DBs
NCBI-GeneID:
121557980
NCBI-ProteinID:
XP_041727359
LinkDB
All DBs
Position
9:complement(336708..356620)
Genome browser
AA seq
2255 aa
AA seq
DB search
MDIFGGAPRVLGYSRPVVAQCGTDAVLQCKIAGDPYPEVVWEKKNVQILSEGRYRLSEEG
KAYFLHITGVRLEDAGQYICKASNSVGETCAPATLKVEGDSQEPEGIQKQTWLENGALGG
QRNAEFKRQQSSELEGQQNQNGEYRRQENREYGGQQNGDVEQRNGEVDQQNGEVDQQDGA
VEKENGEVSERGKKKQRYEEEPLLSDDRPHFLIKPLSLRVDRGEDAAFSCKLSGNPLPQV
VWEKDGKKLSDIFESAHFNVSSQDGGWFQLKIFRTRMPDGGVYTCRAHNNQGGALAGAVL
LVEPVPGTAGERASTSNGYSNGQTSPRSMRHRMGRHGSSRLPDEPNLNSSNVKKFTVSEG
KHAKFRCFVTGKPKPEIIWKKDGVPLEAGRRHLLFEDREGYYTLKVMYCKHQDTGLYVCA
ASNALGHTLSSVYLTVKAPAVRFRRSLQDVEVRERGMAVLECEVPNEGIPTAWYLEDQRL
QPGGKYAIEQKGTRHRLTIRDVGADDDGVYLCEMPDGGKSIAELAVKGTIVKKLPRKLDV
LEGENAAFCVEVEEEDMDVHWFKDGLKLRESHQTILKSFGKTHILVFVNVCHGDTGVVTF
VVGRSKTSSRLRVKAARHSPPICPVGVEMDVDRPNSVLLSWEPAPTSQTTTRSVYVLERQ
EVGSPEWLRCATSDTATSAEVMGDSVPCEGDYRFRVCCINKYGRSGHVEFPKAVHLVPGP
KIRTPLQGCEVTEGEDALFSIDLSVMVTGTWFLNCTQLQDSQCYSIQQAKTQHSLVIHSA
RVEDHLAEVTFIANGVRDSVVLKVQAAVVKFSPISESDSNKRVETGDPVVLYCEVSHPSA
RVGWFKDGVELQVTDGLNIQSEGNMRRIVIQLAEFTDSGVYTCETMGDVIKFNVEVEGPP
VQFSEIPEEDLQKSAMELDAVVLTCEVSREDANATWYKDGVEVQASDNITIQTEGTMRRL
IIRCAETSDAGTYSCQSGDNSLSFTVNIKEPPVMIVEPKEDVVMEGHISEQVVLQCELSR
SSGEVHWFKDGLQVLETENVQLTSEGPYRRLTLLCGSAEDSGEYVCDTDGDSVFFQVTIT
EPPVRIVSPTESELELTSLTSERLELSCEISQPDAQVRWYRDGLEVEESASLILEVQGAH
RTLVIPTTTVEDTGEYVCDTEDNSVTWLVTITEPPVKLARPETMSDVMDCFSGDPIVLEI
EVSRFNAEVIWMKDGGEVEESSDVSITEDGLIRRLTIRTPAPGDSGKYTCLASDDLIDFQ
VKVSEPSVKIVNRSEVKTEVKSLLSDDIELECELSLANAVAKWYKDGRRLNTDERFCEEE
EGAFRSLVILNAELEDSGDYFLDAGDDNITFHVTVQEPPVTILGNSEDADYQEMVAGDDL
ILACEVSRANAPVQWYCNDRQLTSDDRTYIESYGTLRKLILSDVLPSDSGKYMCDAIDDK
MVTMVKIQDSPVTFVNKQAVNIITGYEAESVTLMGVVSKENAPVRWLKDWTPVTGDRFHT
GVDGATRFLTIDPLRRSDSGEYTVDANTDEMHFSLLVKEMRVKFARPLHDTVAHADGMVT
IRCEVCKPKADVQWLKDGVEIVPGRRFTIRADGVERSLTIHRLTREDTGEYACESKDDRT
AARLRVEMPRVVEFLTELHNTMVLEGEDATFKCVVSPEDVQLVWVMDGEPIVMGDRFQAT
QNGLCHTLVIKNCQILDSSKITVEAEGNESKATLKVQEAQVIFTKKMDAVMAEEYGDATM
ETEVSLDTGEVQWMRQGVVIQPGPRHTLGQSGRKRSLTICNLNLSDRGTYRCETLHDRTQ
VKLNVEPRKIAIRKGLVETETFERETASFEVELSHTDVEGIWQKDGIRVKPSNHWRVSCN
GLVHGLTLSNLTLEDTGTIVFSAEGLRTSARLTVKETPVTIMKKLVDMRLEQGSPATLEC
ELSRQNVEVRWLKNGTELKPGKTQYRIYSMGRKRFCQLLQCSLSDAGTYTCDVGDINTSC
NLEVYEPELEVLHGLEDLYVQEDQNAVFMCEVSIEDVTGEWYKDGHKIRPTSTIKIRTEG
TKHFLLMCSVKAEDSGKIRFVAKQTESTAYLEVEEAPVSIVKPLRDRTALEKHRVILDCN
VSTPRCEVTWYRGKAELVSSDRLEIHSDGCYHKLTIHEATVEDEGTYSIEVGEHTSTAQL
LVEAQSLLIETELEDVEVTAPDQACFQCEVSVAISRPPVWTLNGETIQSSPEVRLENHGT
VHKLTLKKTRPDMSGTVTFAMGKAKSRAKLNVMWK
NT seq
6768 nt
NT seq
+upstream
nt +downstream
nt
atggacatattcggtggtgccccccgtgtgctgggctactcgcgccccgtggtggcacag
tgtggcacggacgccgtcctgcaatgcaagatcgccggggacccttatcctgaggtggtc
tgggagaagaagaacgtacagatcctgtcggagggacgctacaggctgtcggaggagggc
aaggcctacttcctacacatcactggggtcaggctggaggacgcaggccagtatatctgc
aaggccagtaacagcgtgggtgagacgtgcgcacctgccacactgaaggtggagggggac
agtcaggagccagaagggatacagaaacagacctggctggagaatggagcgttagggggg
caacggaatgcagagtttaaaaggcaacagagcagcgagttggaggggcaacagaaccag
aatggggaatatagacggcaagagaacagggagtacggagggcaacagaatggggatgta
gagcagcggaacggagaggtagatcaacagaacggagaggtagatcaacaggatggagcg
gtagagaaagaaaatggagaggtgagtgagcgggggaaaaagaagcagcgctatgaagag
gagcccctgctgtcagatgacagacctcacttcctcatcaagcccctctccctgagggtg
gaccggggcgaggacgcagccttctcctgtaagctgtctggtaaccctctgccccaggtg
gtgtgggagaaggacgggaagaagctgagcgacatcttcgagagcgcccacttcaacgtc
agcagccaggacggaggctggttccagctgaagatcttccggacgcggatgcccgacggg
ggtgtctacacctgcagagcccataacaaccaaggtggggcgctggcgggcgcagtgctg
cttgtggagcccgtccccggaacggcaggagagcgggcgtccacgtcaaatgggtacagc
aacgggcagacatcacctcgtagtatgaggcacaggatggggagacacggttcgtcgaga
ctgccggacgagcccaatctgaactcgtccaatgtgaagaagtttacggtgtcggagggg
aaacatgctaagttccgctgcttcgtgacggggaaacctaagcctgagatcatctggaag
aaagacggagtgcccctagaggctgggaggcgtcaccttctgtttgaggatagagagggc
tactacacgctcaaagtgatgtactgtaaacatcaggatacagggctctacgtgtgtgct
gcatccaacgctctgggacacaccctcagctctgtttacctgactgtcaaagctccagcg
gtgcggttcaggcggtcgctgcaagacgtggaggtgagagagaggggcatggccgtgttg
gagtgtgaggtacctaatgagggcatccctacagcctggtacctggaggaccagagactg
cagccagggggtaaatacgccatagagcagaaaggaaccagacacaggctcactattcga
gatgtaggagcggacgacgatggggtctatctctgtgagatgcctgacggagggaagagt
atcgctgagctggccgtcaaaggtacaattgttaaaaaacttcctcgaaaactagacgtg
ttggagggggagaacgcagcgttctgtgtggaggtagaggaggaggacatggatgtccac
tggttcaaagatgggctgaagctacgcgagagccaccagactattctcaagtcctttggt
aaaacccacatcctggtgttcgtcaacgtctgccacggggacactggggtcgtgaccttc
gttgtgggaagatccaagacctcgtcccggctcagagtcaaagctgccagacacagccct
cccatctgtccagtgggggtggagatggatgtggacaggcctaacagtgtgctcctctct
tgggagccagcccccaccagccagaccaccacacgctccgtctatgtcctggagagacag
gaggtgggatcaccggagtggctgaggtgtgcgacctccgacacggcgacctctgcagag
gtcatgggcgacagtgtgccatgcgagggcgactaccgcttccgtgtctgctgcatcaat
aagtatggtcgtagtggacacgtggagttccctaaagccgtccatcttgtgccaggtccc
aagatcaggacacctctccagggctgtgaggtgacggagggggaagacgccctgttctcc
atcgatctgtcagtgatggtgacgggcacctggttcctgaactgtacccagctacaggac
agccaatgctactctatccaacaggccaagacacagcactccctggtcatccacagcgcc
agggtggaagaccatttggcagaggtcaccttcatcgccaacggagtcagagactcagtg
gttctcaaggttcaagctgcggtggtgaagttcagcccaatatcagagtcagacagtaac
aagagggtggaaactggtgaccctgtggtcctgtactgtgaggtgtcccacccctcagcc
agggtaggctggttcaaggatggggtggagctacaggtgacagatggtctcaacatccaa
tcagaaggcaatatgaggaggatcgttatccagttggctgagttcacagactctggtgtg
tacacatgcgagacgatgggtgatgttatcaaattcaacgtggaggttgaaggtccccct
gtgcagttcagtgagatccctgaggaggatctccaaaagtctgctatggagctggatgct
gtggtgctcacctgtgaggtttccagagaggacgccaatgctacctggtataaggatggg
gttgaggtccaggccagtgataacatcaccatacaaactgagggcaccatgaggagactg
atcatccgttgtgctgagacctcagacgcagggacatacagctgtcaatcaggagacaac
agcctctcattcactgtcaacatcaaagagcctccagtgatgatcgtggagcccaaggag
gacgtggttatggagggtcacatctctgagcaggtggtgctgcagtgtgagctgtcccgc
tccagcggtgaggtccactggtttaaggacggccttcaggtcctggagacggagaacgtc
cagctgacgtccgagggaccgtacaggaggctgaccctgctctgcggctcggcagaagat
tccggagagtacgtctgcgacacggatggagactctgtgttcttccaggtcaccatcaca
gagcctccggtgcgaatcgtctcccccactgagtctgagctggagctgaccagcctgacc
tctgagaggctggagctcagctgtgagatctcccagcccgatgcccaggtacggtggtac
cgagacgggctggaggtggaggagagtgcctctctcatcctggaggtccagggagcccac
aggacactggtcatccccacgaccactgtggaggacacaggagagtatgtgtgtgacaca
gaggataactcggtcacatggctggtcactattacagagcctcctgtgaagctggcccgc
cctgagacaatgtctgacgtaatggactgtttctctggagaccccatcgtcctggagatt
gaggtgtcacggttcaacgctgaggtgatctggatgaaggatggaggagaggtggaagag
agcagtgatgtctccatcactgaggacggactcatccgccgcctcaccatccgcacaccc
gccccaggggattctgggaaatacacctgtcttgcctcagatgacctcatcgacttccag
gtcaaggtgtcagagccctcagtgaagatcgtgaataggtcagaggtgaagacagaggtc
aagtccctgctctctgatgacatcgagcttgagtgtgaactctccctggccaatgccgtt
gctaagtggtacaaagatggccgccggttaaatacggacgagaggttctgtgaggaggaa
gaaggggcgttccggtctctagtgatccttaacgctgagctggaagattccggagactac
ttcctggatgccggagatgacaacatcaccttccatgtcactgtgcaagagcctccagtg
accatcctggggaactctgaggacgcagactaccaggagatggttgccggggacgacctg
atcctggcctgtgaggtgtcccgggccaatgcccctgtccagtggtactgtaatgacaga
cagctgactagcgatgaccggacctacatcgagagctacggcacgctgaggaaactcatc
ctctctgacgtcctgccctccgactctgggaagtacatgtgtgatgctatcgatgacaag
atggtcaccatggtgaagatccaagactcccccgtcaccttcgtaaacaaacaggcagtg
aacatcatcacgggttacgaggcagagagcgtgacgctgatgggggtcgtgtctaaggag
aacgctcccgttcgctggctcaaggactggacgcccgtcacaggggaccgcttccacacg
ggggtcgacggcgccacccggttcctcaccattgacccgctgagacgctcggacagcgga
gagtacaccgtagacgccaacacagacgagatgcatttcagtctgctagtcaaagagatg
agggtgaagtttgccaggccgctccacgacaccgtggcccatgcggacggcatggtgacc
atacgctgtgaggtgtgtaagcccaaggcggatgtccagtggctgaaggacggcgtggag
atcgtccccggccggaggttcaccatccgggccgacggcgtggaacgcagcctgaccatc
cacaggctgaccagggaggacacgggggagtacgcctgcgagtccaaggacgaccgcacc
gccgccaggctcagagtcgagatgccccgcgtggtagagttcttgacagagctccacaac
accatggtgttagagggagaggacgccacctttaagtgcgttgtgtcgccagaggacgtg
cagctggtgtgggtgatggacggagagcccatcgtcatgggcgaccgtttccaggcgacg
cagaacggcctgtgtcacaccctggtgatcaagaactgtcagatcctggactcctctaag
atcacagtggaggctgaggggaacgagtctaaggccaccctcaaagtacaggaagctcag
gtgatcttcactaagaagatggatgcagtgatggctgaggagtacggagacgctaccatg
gaaacagaggtcagtctggacacgggcgaggtccagtggatgaggcagggagtggtcatc
cagccaggaccccgacacaccctgggccagagcggacgcaaacgcagcctgaccatctgc
aacctcaacctctctgaccgcggaacctaccgctgtgaaaccctgcacgaccgcacgcag
gtcaaactcaacgtggagccccgtaagatcgccatccgcaagggtctggtggagacggag
acgtttgagcgggagacggcctccttcgaggtggagctgtctcacactgatgtggagggc
atctggcagaaggacggcatccgggtcaaacccagcaaccactggcgggtgagctgcaac
gggctggtccacggcctcaccctgtccaaccttaccctggaggacacgggcaccatcgtc
ttctctgcagagggactccggacctctgccaggctcactgtcaaagagactccagtgact
atcatgaagaagctggtagacatgagactggagcagggctctcctgccacattggagtgt
gagttgtccagacagaacgtggaggtcaggtggctgaagaatgggacagagctgaagcca
gggaagacccagtaccgtatttactccatggggaggaagaggttctgtcaactgctgcag
tgtagcctctctgatgcaggcacctacacctgtgacgtaggagacatcaacacatcctgt
aacctggaggtctatgagcctgaactggaggtgctacatgggctggaggacctgtatgtc
caggaggaccagaacgctgtgttcatgtgtgaagtgtccattgaggacgtgactggagag
tggtacaaggatggacacaagatacgacccactagcaccatcaagatacgcacagagggg
accaaacacttccttctgatgtgcagcgttaaagctgaggattctgggaagatccgcttt
gtggccaaacagacagaatcaacagcctacctagaggtggaagaggcccctgtgtctatc
gtgaagcctctgcgagaccgcacggctctggagaagcaccgcgtgattctggactgcaac
gtgtccacgccgcgctgtgaggtcacatggtacagaggcaaggcagagctggtgtcttct
gataggctagagatccacagcgacggctgctaccataaactgaccatccacgaggcgact
gtagaggacgagggtacctatagtatagaggttggggagcacacgtccacagcccaactc
ctggtagaagcccagtccctgttgatagagacagagctggaggatgtggaggtgacagct
cctgaccaggcctgtttccagtgtgaggtgtccgtggccatcagcaggcccccagtgtgg
actctgaatggggagaccatccagtccagccccgaggtccgcttagagaaccatggaacc
gtccacaaactgaccctgaaaaagaccagacccgacatgagcgggacggttaccttcgcc
atgggaaaggccaagagcagagccaaactgaacgtgatgtggaagtag
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integrated database retrieval system
