Coregonus clupeaformis (lake whitefish): 121558110
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Entry
121558110 CDS
T08357
Name
(RefSeq) collagen alpha-1(XXVIII) chain isoform X1
KO
K23619
collagen type XXVIII alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cclu01002
]
121558110
Peptidases and inhibitors [BR:
cclu01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
121558110
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Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Kunitz_BPTI
VWA_CoxE
DUF1194
Motif
Other DBs
NCBI-GeneID:
121558110
NCBI-ProteinID:
XP_045081462
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Position
16:complement(1097463..1123389)
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AA seq
1225 aa
AA seq
DB search
MSPSLYWFLLLCRLHSLWAQDDYGPYDERTVGRTAKNKRLTTNVIPKNGQSLLYKDCGLE
LAFLVDSSESAKDNHAQEKKFAIDVVERLQGVKLQTGRALSSRAALLQFSSHVIVEQTFK
QWSGVANFKARIAPIVYIGHGTYTTYAITNLTKIYMEESGQGSIRVAILLTDGIAHPKNP
DIFSAVADANNQGVKFFMVGITPAANDAPNVAQLRQLASSPASRYLHNLQDRSIVDKVIK
EITELADEGCPLALKCACEKGERGPIGLSGKKGNSGDDGNPGVKGSKGESGLSGLPGRDG
EEGKPGYKGEQGERGECGMPGIKGDRGPEGPVGTRGNRGLQGLPGPHGDAGPEGLTGKKG
ERGLSGPPGIQGETGIGLPGPKGDVGFQGRLGPPGPPGLGEPGLPGPQGPQGVQGEKGPI
GEGFDGPKGDRGLEGPRGPRGQPGAGIKGDKGGFGPQGFPGPVGLPGLGIQGEKGVEGPR
GPPGGRGQQGDGYPGPKGDQGLPGEVGSTGERGAGEPGAKGEPGASGLAGFPGLPGEDGA
PGQKGEPGVAGLRGPEGAAGIGTQGEKGDQGQRGIRGLGGPPGIAGPSGAKGEPGTPGRL
GMPGLPGRGIIGPKGDLGQPGPAGPLGETGYGLPGPKGDRGGPGPSGPFGPKGDGYPGPT
GSPGLPGLPGEPGLEGLGIPGPKGDIGFRGLPGLAGPPGKGQQGLPGGIGRPGPPGPTGP
PGQGIQGPKGEAGSQGVTGPRGPPGEGFPGAKGDRGSGGERGLKGVKGDLGDPGVPGQSG
RPGFKGEMGLTREVIIKMIKEICGCGIKCKVRPMELVFVIDSSESVGPENFEIIKDFVAA
LVDRVTVGRNATRIGLVLYSLEAKVEFNLTRYMNNQDVKNAIRNIRYIGEGTHTGTAIHK
ATQVAFYHSRKGVRKVAIVITDGQTDKREPVMLDIAVREAHAANIEMYALGIVNTSDPTQ
AEFKRELNLIASDPDSEHMYLIDDFNTLPALESKLVSKFCEDENGAPIYNRVTNGYGNNG
YRNGNNGNYDNGNYGNGYGTTNQEDFNNGRRTVTTTGTGTQSQGGRVALTQPINPSTATV
QIGQREGGQDGGIYNPDSGTGRGDVPTLNRNTSSSSRESSSSNTGGSSSSSSSSSGTSSS
SSGSSGSIQLVPAPRPALPKEFVPLDPRCALVLDPGPCRDYKMRWYYDKQANSCAQFWYG
ACEGNQNRFDTEEECKRTCVQGRAG
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgtccccctctctgtactggttcttgctgctctgtagactccacagtctctgggctcag
gatgactatggcccatatgacgagagaaccgtgggcaggacagccaagaacaaacgactg
acaaccaacgtcatacccaagaatggccaatcacttttgtacaaggactgtggcctggag
ctagccttcctggtggacagctcggagagcgccaaggacaaccacgcccaggagaagaag
ttcgccatagatgtggttgaacgcctgcagggggtcaagctccagacgggccgggctctc
agctcacgagccgccctcctgcagttcagcagccatgtgatcgtcgagcagaccttcaag
cagtggagcggggtggccaacttcaaggctcgcattgcgcccatcgtctacatcggccac
ggcacctacaccacctacgccatcaccaacctgaccaagatctacatggaggagtcaggg
caggggagcatcagggtggccatactgctgacggacggcatcgcccaccccaagaaccca
gacatcttctctgccgtggccgatgccaataaccagggcgtgaagttcttcatggtgggc
atcacgcccgcggccaatgacgcccctaacgtggcacagctccgccagctggccagctcc
ccagcaagtcgctacctccataaccttcaggacaggagcatcgtggacaaggtcatcaaa
gagatcacggagttggctgatgaggggtgtcctctggccctgaagtgtgcgtgtgagaag
ggagagaggggacccattggcctttcgggcaagaagggtaattctggagatgatgggaac
ccaggtgttaaaggatcgaagggtgagagtgggctcagtggacttcctggtcgagatggg
gaagagggcaagccaggctacaaaggagagcagggggagagaggagaatgtggcatgcct
ggaatcaaaggagacagggggcctgaggggccagttggcaccaggggaaacagagggcta
caggggttacctggtccacatggcgatgccgggcctgagggtctcacagggaaaaaaggt
gagaggggactttctgggccacctggaatccaaggagaaactgggatcgggcttcctgga
cccaagggtgatgtggggttccaggggcgactggggcctccgggaccacctggcttaggg
gaacctggactaccggggcctcaagggccacagggcgtccaaggagagaagggtcctata
ggagaaggctttgacggaccaaagggggaccggggcctggaggggccgagggggcccaga
ggacagcccggcgctggaatcaaaggagacaaggggggctttggccctcaaggttttcca
gggcctgtcggcctgccagggctgggcattcagggggagaagggtgtagaggggcctcgg
gggccaccagggggcaggggccaacaaggagatggatatccagggcccaagggtgaccag
ggcttaccaggggaggttggttcaacaggagagagaggggctggcgaacctggggctaag
ggtgagccaggagcgtcaggattggctggttttcctggcctcccaggagaggacggggcc
ccgggacagaagggggaaccaggtgttgctggtctgagggggccagagggagctgcgggg
attggcactcagggtgagaagggagaccagggccagaggggcattcggggcttgggtggg
cctcctggaattgctgggccctctggagcaaagggggagcctgggacaccaggtcgactg
ggtatgccaggactgccaggccgaggcatcataggacctaagggcgaccttggccaacct
ggtccagctggaccattaggggagacaggctacgggctgcctggtcctaagggtgatcgt
ggaggtcctggtccgtctggtccattcgggcccaaaggcgatggttatcctggccctacg
ggatctcctggtctaccggggcttcctggtgaaccaggccttgaggggctgggcatccct
ggaccaaagggtgatattggcttcaggggcttgccaggtttagcaggccccccaggcaag
gggcaacaaggactaccgggtggcattgggcgaccgggccccccagggccaacgggaccc
cctgggcagggtattcaggggccaaagggcgaggcagggtctcagggcgtgactggccct
cgggggccaccaggggaaggattcccaggggccaagggtgaccgcggctctggaggggag
aggggcctgaagggggtcaaaggtgatttgggcgaccctggagttcctggccaatcaggc
agaccaggattcaaaggcgagatgggcctcacaagagaagtcatcattaaaatgatcaag
gagatttgtggttgcggcatcaaatgcaaggtgcggcccatggagctggtgttcgtcatc
gacagctcggagagcgtggggccggagaactttgagatcatcaaggactttgtggcggca
ctggtggaccgtgtgacggtgggccgaaacgccacccgcatcggcctggtcctctacagc
ctggaggccaaggtagagttcaatctgacgcgctacatgaacaaccaggacgtcaaaaat
gcgataagaaatatccgttatataggtgagggcacccacacgggcaccgccatccacaag
gccacccaggttgccttctaccactcgcgcaagggtgtcaggaaagtggctatagttatt
acggacggacagacggataagcgggagccggtgatgctggatatcgcggtgcgggaggcg
cacgcagccaacatcgagatgtacgcattggggatcgtgaatacgtcggaccccacgcag
gctgaattcaagagggagctcaacctgatcgcgtcggaccctgatagtgaacacatgtac
ctcattgatgacttcaacacgctgccagctctggagtccaagctagttagcaagttctgt
gaagacgagaacggtgctcctatatacaaccgtgtcaccaacggctacggcaacaacgga
tacaggaacgggaacaatgggaactatgacaacgggaactatggcaatggctatgggacc
accaaccaggaggacttcaacaacgggaggcgaacagtcaccactaccggcacaggcact
caaagtcagggtggcagggtagccctaacccagcctatcaaccctagcactgccacagta
cagatagggcagcgtgagggaggccaggatggaggtatttacaacccagattcggggact
ggtcgcggggacgttcccacgttgaaccgcaacacgtcctcctcctccagggaatcctca
tcttccaatacaggagggtcctcttcctcttcctcatcatcatcaggaacatcatcttca
tcctcagggtcctcaggctctatccagttagtgcctgcaccacgacccgcacttcccaaa
gagtttgttcctctggaccctcgctgtgcactggtcctagacccgggcccgtgtcgggac
tacaaaatgcgctggtactatgacaagcaggccaactcctgcgcccagttctggtacggc
gcctgtgagggaaaccagaaccgcttcgacacggaggaggagtgcaagaggacatgtgtg
caaggcagagcgggctga
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