Coregonus clupeaformis (lake whitefish): 121558597
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Entry
121558597 CDS
T08357
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04142
Lysosome
cclu04144
Endocytosis
cclu05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121558597
04142 Lysosome
121558597
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
121558597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121558597
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cclu04147
]
121558597
Membrane trafficking [BR:
cclu04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
121558597
Exosome [BR:
cclu04147
]
Exosomal proteins
Proteins found in most exosomes
121558597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
121558597
NCBI-ProteinID:
XP_041727920
LinkDB
All DBs
Position
5:3995687..4019156
Genome browser
AA seq
1687 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNT
PIRRPISADSAIMNPASKVIALKDAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV
ALVTDNAVYHWSMEGDSQPVKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAAGFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPPTG
NQPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRIS
GETIFVTAPHEPTAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAG
AEELFARKFNTLFAAGNYSEAAKVAANAPKGILRTPDTIRKFQSVPAQPGQTSPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVY
LRANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWMFLLRNVMRISPEQGLQFSQMLVQD
EEPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPAEGPLQTRLLEMNLVHAPQVADAI
LGNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLS
VEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTNSLTELFESFKSFEGLFYFLGSIV
NFSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNTLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLILVVKGQ
FSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPF
YDSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRKDPELWASV
LLESNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNT
SAVQVLIEHIGNLDRAYEFAERCNEPPVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYME
VGQAAAQSGNWEDLVKFLQMARKKSRESYVETELIFALAKTNRLAELEEFINGPNNAHIQ
QVGDRCYDERMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA
CVDGNEFRLAQMCGLHIVVHADELEELINYYQDRAYFEELITMLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEFDNAIITMM
SHPSDAWKEGQFKDIVTKVANVELYYKAIQFYLEFKPLLLNDLLIVLSPRLDHTRAVNFF
MKTKQLSLVKPYLRSVQNHNNKGVNEALNNLFITEEDYAALRASIDAYDNFDNITLAQGL
EKHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDVELAEELLAWFLE
EDKKECFAACLFTCYDLLRPDVVLETAWRHNIMDFSMPYFIQVMREYLSKVDAIKEKVDK
LDASESLRKQEEQNTESQPIVYGTPQLMLTSGPGQAVPPQPGYGGYGYPAAPAGYGQPPQ
PGFGYGM
NT seq
5064 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaatactacctatccgcttccaggagcacctgcagctccagaacctggggatc
aacccagctaacattggattcagcaccctgactatggagtctgataagttcatctgtata
agagagaaggtgggcgagcaggcacaggttgtcatcattgatatggccgaccccaacact
cccatccgtaggcccatctctgcagatagcgccatcatgaaccctgctagcaaagttatt
gccctcaaagacgcggcaaaaaccctccagattttcaacattgagatgaagagcaagatg
aaggctcacaccatgactgatgacgtcactttctggaagtggatctccctcaacacagta
gcactggtcacagacaacgccgtctaccattggagcatggagggagactcccagccagtc
aaagtctttgaccgacactccagcctagcaggctgtcaaatcatcaactaccgcactgac
gccaaacagaaatggctgcttctcattgggatttcagcacagcaaaaccgtgtggtggga
gccatgcagctgtactctgtggacaggaaggtgtcccagcccattgagggccatgctgcc
ggcttcgcccagttcaaaatggagggtaacacagaggaatccacactgttctgcttcgct
gtccgtgggcaagctggaggaaagttacacatcattgaagtgggaaccccaccaacaggc
aatcagccatttccaaagaaggcagtggacgtgttcttccctcctgaggcccagaatgac
ttccctgtagccatgcagatcagctctaagcaggatgttgtctttctcatcaccaaatat
ggctacatccacctgtatgacctggagactggcacctgtatctacatgaacaggatcagc
ggggagaccatctttgttacagccccacatgaaccaaccgctggcatcattggagtcaac
aggaaaggacaggtgttgtcggtgtgtgtggaggaggagaacatcatcccctacatcacc
aacgtgcttcagaacccagacctggccctgcgcatggccgtgcgcaacaacctggccggg
gccgaggagctgttcgcccgaaagttcaacaccctgttcgctgcagggaactactcagag
gctgccaaggtggccgccaacgctcccaagggtatcctgcgtaccccagacaccatccgt
aagttccagagtgtaccggcccagccgggccagacctctcccctgctgcagtactttggc
atcctgctggaccagggccagctcaacaagtttgagtctctggagctgtgcaggcccgtc
cttcagcagggacgcaagcagctgctggagaaatggctcaaagaggacaagctggagtgt
tcagaggagctgggtgacctggtgaagtcagtggaccccactctggccctcagcgtctac
ctcagggccaacgtgcccaacaaggtcatccagtgcttcgctgagaccggacagttccag
aaaattgtcctctacgccaaaaaggtgggctatactccagactggatgttcctgctgaga
aacgtgatgaggatcagtccagaacaaggcctgcagttctcccagatgctggtgcaggac
gaggagccgctggctgacatcacacagatcgttgatgtgtttatggagtataacctgatc
cagcagtgtacctccttcctcctggacgccctgaagaacaacaggcctgctgaggggcct
ctgcagacacgcttgctggagatgaacctggtccacgccccacaggtggccgatgccatc
ctgggcaaccagatgttcacccactacgaccgtgcacacgttgcccagctgtgtgagaag
gctggcctgctgcagagggcactggagcactacactgacctgtacgacatcaaacgggcc
gtggtgcacacacacctgctcaaccctgagtggctggtgaacttctttggatccctgtca
gtggaggactctctagagtgtcttcgggccatgctgtcggctaacatccgtcagaacctg
cagatctgtgtccaggtggcctccaagtaccacgagcagctctccaccaactccctcacg
gagctctttgagtcattcaagagcttcgaaggtctgttctacttcctgggttccatcgtt
aacttcagccaggacccagaggtccacttcaagtacatccaggccgcctgtaagacagga
cagatcaaagaggtggagaggatctgcagagagagcaactgctacgaccccgaacgagtc
aagaacttcctcaaggaagctaagctgactgatcagctccccctgatcatcgtgtgtgac
cgcttcgactttgtccatgacctggtcctctacctgtaccgcaataccctgcagaaatac
attgagatctatgtgcagaaggtgaaccccagccgtctgccggtggtgattggagggctg
ctggatgtggactgtgctgaggatgtgattaaaaacctgatcctggtggtgaaaggacag
ttctccactgatgaactggtggctgaggtggagaagaggaacagactgaagctgctcctg
ccctggctggaggcccgtatccatgagggctgtgaggagccagctacccacaatgccctg
gccaagatctacatcgacagcaacaacaacccagagcgcttcctgcgtgagaaccccttc
tacgacagccgcgtggtgggcaagtactgtgagaagagggacccccacctggcctgcgtg
gcctacgagagaggacagtgtgaccaggagctcattaatgtgtgcaatgagaactctctg
ttcaagagtctgtctcgctacctggttcgccgtaaagaccctgagctgtgggccagtgtg
ctgctggagagtaacccgttcagaagacccctcatcgaccaggttgttcagacagccctg
tctgagacccaggacccagaggaggtgtccgtcacagtcaaggccttcatgactgcagac
ctccccaacgaactcattgagctgctggagaagatcgttctggataactcagtcttcagt
gaacacagaaacctgcagaacctgctgatcctgacagccatcaaggcagaccgtacccgt
gtgatggagtacatcaaccgcctggacaactacgacgcccccgacatcgctaacatcgcc
atcagcaacgagctcttcgaggaggccttcgccatcttcaggaagtttgacgtcaacacc
tctgccgtgcaggttctgattgagcacattgggaacctggaccgggcctacgaatttgct
gagcgctgcaacgagcctccagtgtggagccagctggccaaggctcagctgcagaagggt
ctagtgaaggaggccattgactcctacataaaggctgacgacccctctgcctacatggag
gtgggccaggctgcagcccagagtggtaactgggaggacctggtgaagttccttcagatg
gcccgtaagaagtcccgtgagtcatacgtggagacagagctcatcttcgccctggccaag
accaaccgcctggctgaactggaggagttcatcaatggacccaacaacgcccacatccaa
caggtgggtgacaggtgttatgatgagaggatgtatgacgcggccaagctgctctacaac
aacgtgtccaacttcgggcggctagcgtccaccctggtccacctgggagagtaccaggct
gccgtggatggagcccgcaaggccaacagcacccgcacctggaaagaggtgtgctttgcc
tgtgtggatggtaacgagttccgcctggcccagatgtgtggcctgcacatcgttgtccat
gctgatgaactggaggagctcatcaactactaccaggaccgtgcttactttgaggagctg
atcactatgctggaggcagccctgggcctggagcgggctcacatgggcatgttcaccgag
ctggccatcctctactccaagttcaaaccccagaagatgagggagcacctggagctcttc
tggtccagagtcaacattccaaaggtcctgagggctgcagagcaggcccacctgtgggcg
gagctggtcttcctctatgacaagtatgaagagtttgacaacgccatcatcaccatgatg
agccacccctcagacgcctggaaggagggacagttcaaagacatcgtcaccaaggtggcc
aatgtggagttatactataaggctatccagttctacttggagttcaaaccattgttactg
aacgacctgctcatagtgctgtcaccacgactcgaccacacccgcgcagtcaacttcttc
atgaagaccaagcagctgtcactggtcaagccgtacctgcggtcagtgcagaaccacaac
aacaagggtgtcaacgaagcacttaacaacctcttcatcacggaggaagactatgcggcc
ctgcgtgcctccattgacgcctacgacaactttgacaacatcaccctggcccagggcctg
gagaagcacgagctgattgagttcagaaggatcgctgcctacctcttcaaaggcaacaac
cgctggaagcagagcgtggaactctgcaagaaggacaaactctacaaggacgccatgcag
tacgcgtctgagtcgaaagacgtcgagctggctgaggagttgttggcgtggttcctggag
gaggacaagaaggagtgctttgccgcctgcctcttcacctgctacgacctgctgagacct
gacgtggtgctggagacggcctggaggcacaacatcatggacttctccatgccctacttc
atccaggtcatgagggagtacctctccaaggttgatgcgattaaggaaaaggtcgacaag
cttgatgcctcagagtccctgaggaaacaggaggagcagaacacagagtcccagcccatt
gtttatggcacgccccagctcatgctcacttcaggccctggtcaggccgtgcccccccag
cctggctatggaggctacggctacccagcagcacccgccggctacggccagcctccccag
cctggctttggctacggcatgtga
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integrated database retrieval system
