Coregonus clupeaformis (lake whitefish): 121558705
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Entry
121558705 CDS
T08357
Name
(RefSeq) spastin isoform X1
KO
K13254
spastin [EC:
5.6.1.1
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121558705
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
cclu04812
]
121558705
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.1 microtubule-severing ATPase
121558705
Membrane trafficking [BR:
cclu04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
121558705
Cytoskeleton proteins [BR:
cclu04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
121558705
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
RuvB_N
Vps4_C
AAA_22
AAA_5
TIP49
MIT
Mg_chelatase
IstB_IS21
AAA_16
AAA_14
DUF815
nSTAND3
NPHP3_N
AAA_2
AAA_24
Motif
Other DBs
NCBI-GeneID:
121558705
NCBI-ProteinID:
XP_041728046
LinkDB
All DBs
Position
1:3044856..3061882
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AA seq
484 aa
AA seq
DB search
MSDKVRAGNGKDNGDLIRSYHKQAFQYISVALKIDEDDKGVKEEAVQWYQKGISELQKGI
AIEVIGQGEHYDRAKRLQTKMITNLTMAKDRLALLEGASASKKRNSSQSPSGHLPTPPVR
PTGPKNQPGPGGSMSSHSKPASTVRTGSSKTNNIKVVPRAAGRGQNGRPAAASKEPQRRD
MKNFKNVDSKLANLILNEIVDSGSAVSFEDIAGQELAKQALQEIVILPALRPELFTGLRS
PARGLLLFGPPGNGKTMLAKAVAMESHATFFNISAATLTSKWVGEGEKLVRALFAVAREL
QPAIIFIDEIDSLLCERREGEHDASRRLKTEFLIQFDGVQSEGAERVLVMGATNRPQELD
EAVLRRFAKRVYVSLPTEETRFKLLNNLLGKHGHPLNQKELAHLAKMTGGYSGSDLTSLA
KDAALGPIRELGPEQVKNMAASDMRNIRCRDFEDSLKRIKPSISPTTLDAYVRWNTDYGD
TTVF
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacaaagttagagctgggaacggcaaagacaacggagatctcattagaagctac
cataaacaggcatttcaatacatatccgtggcactcaagatcgatgaagatgacaaaggt
gtcaaggaggaggcagtccagtggtatcagaaaggcatttcagagcttcaaaaggggatt
gctattgaagtcataggacaaggagaacattatgatcgggcaaagaggcttcaaactaag
atgatcaccaatctcaccatggcaaaggaccgactcgctcttttagaaggtgcatcggcg
tctaaaaagagaaacagctctcagagtccatcaggccatctccctacccctccagtgagg
cctactggtccaaagaaccagccaggtccaggtggttccatgtccagtcacagcaagcca
gcgagcactgtaagaactggctcaagcaagactaacaatatcaaggttgtccctcgggcc
gcaggaagaggacagaatggcagaccggcagcagcgtcaaaggaaccacagaggagggat
atgaagaactttaagaatgtggacagcaagctggccaacctcatactgaatgagatcgtg
gacagtgggtcagcagtgagctttgaagacatagcaggtcaggagctggctaaacaggct
ctccaggagatagttatcctgcctgcactcagacctgagctgttcactggtctcagatcc
ccggcacgaggtctgctcctcttcggccctccaggcaacggaaagaccatgctggccaaa
gcagtagccatggaatcccacgccaccttctttaacatcagtgctgccactctgacctct
aaatgggtgggagagggagagaagctggtcagagctttgtttgctgtggccagagaacta
cagcctgccatcatcttcattgatgagatcgacagcctgctgtgtgagaggagggaaggc
gaacacgatgccagccgacggttaaaaaccgagttcctcatccagttcgatggggtgcag
tcagaaggtgcagagagggttctggtgatgggagctaccaacaggccacaggagctggac
gaagctgtactcaggcgatttgccaaacgggtgtacgtgtccttgccaacagaggagacg
cgtttcaagttgctgaataatttattgggaaagcatggacacccactcaaccagaaggaa
ttagcccatctagcaaaaatgacagggggctattcaggaagtgatcttacctcattggct
aaggatgctgctcttggaccaatcagggaactgggaccagagcaagtgaaaaacatggct
gctagtgacatgcgtaacatccgctgccgggactttgaggattctctgaagcgtatcaag
cccagtatcagtcccacaaccctggacgcttatgttaggtggaacactgactatggagac
acgacggtcttctag
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