Coregonus clupeaformis (lake whitefish): 121559244
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Entry
121559244 CDS
T08357
Symbol
rlim
Name
(RefSeq) E3 ubiquitin-protein ligase RLIM
KO
K16271
E3 ubiquitin-protein ligase RLIM [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121559244 (rlim)
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121559244 (rlim)
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121559244 (rlim)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-ANAPC11
zf-RING_5
zf-C3HC4_3
zf-RING_UBOX
Prok-RING_4
zf-RING_16
zf-RING_4
Extensin_1
Motif
Other DBs
NCBI-GeneID:
121559244
NCBI-ProteinID:
XP_041728468
LinkDB
All DBs
Position
Unknown
AA seq
715 aa
AA seq
DB search
MEGSDSSEPGASDQPEAQRSRQRDRLDREEAFYQFVNNLSEADYRLMRDNNLLGTPGEIT
AEELLSRLQQIKDGPEQPQPSINSTETGEGEPAEGPEDPSNGDTLLDWLNTVRRTGNTTR
SGHRGNQSWRAVSRTNPNSGDFRFSLEINVNRNLAEQQARAEGEAQEEAPAEAPGDGVEA
VVGVEVQPEAGTEAGTEAGTEAPMETGEVLEEPVVEELAVIVEPEVEMEPEAEVEAEMVP
ELVVEVVPQPPSPAITTPPVSSPATTTPPVSSPAATTPPVSSPAITTPPVSRPASPVVQS
PPAAPSPPSEEPPRRGQRRARSRSPEQRRTRARTTRSRSPLTLDHLDGLPRHVPNATPSH
SPAPLPPEAPAEGSSRTRQHVLSRQSTAEYEAQSAGTGSGTAPEPPTAPAQEGAAGPRPP
TIMLDLQVRRVRPGEYRQRDSIANRTRSRSQNSNNTFLYESERGGFRRTFSRSERAGVRT
YVSTIRIPIRRISDAGLGEATSMALQTMIRQIMTGFGELSYFMDSDSDSSDSNRGAGNPT
GAADLAEALNTPEGGVAGVGVEPPVSVGGPSVGGAGEARTEEGEEGVGLGLAPGIGLGVG
GRARPRAPISLEEPGSLPFLRLAHFFLLNDEDEEQPRGLTKEQIDNLSTRNFGESDALKT
CSVCITEYAEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLVSANRESVV
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggagggctccgacagttccgagccgggcgccagtgaccaaccagaggcccagcgcagt
cggcagcgggaccgactagaccgggaggaggccttctaccagtttgtcaacaacctgagt
gaggcggactaccggctaatgagagacaacaacctgctgggtaccccaggtgagatcaca
gcggaggagttgttgagtcggctgcagcagattaaggatgggccagagcagccgcagcct
agcatcaacagcactgagactggagaaggagaaccggcggaaggtccagaggacccgtct
aacggcgacaccctcttggattggctgaacaccgtcaggcggacaggcaacaccacccgc
agtggtcaccgaggcaaccagtcttggcgggcggtgagccggaccaacccaaacagcgga
gacttccggttcagcctggagatcaacgttaaccgtaacctggctgagcagcaggcccgc
gccgagggggaggcacaggaggaagccccagcagaagcacctggtgatggggtggaggca
gtggtcggagtggaggtccagcctgaggcagggacggaggcagggacggaggcagggact
gaggcgcccatggagacaggagaggtgctggaggaaccagttgtggaggagctggctgtc
atagtggaaccagaagtggagatggagccagaggctgaagtagaagcagagatggtacca
gagttagtagtagaggtggtcccacagccccccagccctgccatcaccacgcctcctgtc
tccagccctgccaccaccacgcctcctgtctccagccctgccgccaccacccctcctgtc
tccagccctgccatcaccacccctcctgtctccagaccagccagtcccgtggtgcagtcc
cctccagccgctcccagccctccctctgaggagcctccgcgacgaggccagagacgagcc
cgcagccgtagccccgagcagcgccggaccagggctcgcaccacacgcagccgttcccct
ctcaccctggaccacctggacggcctcccccgccacgtgcccaacgccaccccctcacac
agccccgcccccctgccccccgaggccccggcagagggaagctcacggactcgacagcat
gttctgtcccggcagagcaccgcagagtacgaggcccagtcagccggaacagggtctggg
accgccccagagccccctaccgccccagcccaggagggggcagcaggaccacgccccccc
accatcatgctggacctgcaggtgcgtcgcgtgcgtccaggtgagtaccgccagagggac
agcattgctaacagaacccgctcacgctcccagaactccaacaacaccttcctgtacgag
agtgagagggggggattccgcaggaccttctcccggtcagagcgtgcaggtgtgaggaca
tacgtcagcaccatccggatccccatcaggaggatcagtgacgcagggctgggagaggcc
acctctatggccctacagaccatgatacgacagatcatgaccggcttcggagagctcagc
tacttcatggactcagactcggactcctcggactcaaaccgtggcgccggtaaccccacc
ggcgctgccgacctggccgaggcgctcaacactcccgaggggggagtagccggcgtgggg
gtggagcctcctgtctcagtgggcgggcctagtgtgggaggagccggggaggcaaggaca
gaggagggggaggagggggttggtctaggtctggccccagggataggtttaggggtgggg
ggtagagctcggccccgcgcccccatcagtctggaggaaccagggtcactgcccttcctc
cgccttgctcacttcttcctcctgaatgatgaggatgaggaacagcccagaggactcacc
aaggagcagatcgacaacctctccaccaggaactttggggagagtgatgctctgaagacc
tgcagtgtgtgtatcacagagtatgctgaggggaacaagttgaggaagttaccctgttcc
catgagtaccatgttcactgtatcgaccgctggctgtctgagaactccacctgtcccatc
tgccgcagggccgtgctggtgtctgctaaccgggagagtgtggtctaa
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integrated database retrieval system
