Coregonus clupeaformis (lake whitefish): 121559508
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Entry
121559508 CDS
T08357
Name
(RefSeq) neural cell adhesion molecule 1 isoform X1
KO
K06491
neural cell adhesion molecule
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
cclu04514
Cell adhesion molecule (CAM) interaction
cclu04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
121559508
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
121559508
04517 IgSF CAM signaling
121559508
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121559508
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121559508
04090 CD molecules [BR:
cclu04090
]
121559508
00536 Glycosaminoglycan binding proteins [BR:
cclu00536
]
121559508
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
cclu00537
]
121559508
04091 Lectins [BR:
cclu04091
]
121559508
Membrane trafficking [BR:
cclu04131
]
Exocytosis
Tethering complex
Exocyst complex assembly proteins
121559508
Cell adhesion molecules [BR:
cclu04515
]
Immunoglobulin superfamily
NCAM1/2
121559508
CD molecules [BR:
cclu04090
]
Proteins
121559508
Glycosaminoglycan binding proteins [BR:
cclu00536
]
Heparan sulfate / Heparin
Adhesion molecules of cell surface
121559508
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
cclu00537
]
Others
121559508
Lectins [BR:
cclu04091
]
I-type lectins (Siglecs)
121559508
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
V-set
FN3_DSCAM-DSCAML_C
C2-set_2
Ig_PDGFR_d4
Pur_ac_phosph_N
C1-set
Izumo-Ig
C2-set_3
Motif
Other DBs
NCBI-GeneID:
121559508
NCBI-ProteinID:
XP_041728680
LinkDB
All DBs
Position
5:5757145..5877229
Genome browser
AA seq
872 aa
AA seq
DB search
MLHAKDILLAFLLVGSTVCLEVEITPTQGEISVGESKFFLCEVVGVAKEIDWYSPSGERI
EPNKPEITVTRNDESSSTLTLYKAGVDSAGTYKCLATNGDQSAEATVNVKFFQRITFKNA
PSPQEFNEGDNANIVCDVISSPPPTIIWKHKGAKIQMEKDVRFKILPNNHLQIRGIKKTD
EGSYTCEGRLMARGEIDLKIIRVIVNVLPTIRVWQSEVNATAGVGQSAMLTCAADGYPEP
MVTWARAGVLLESGEKYSFNEDGSEMTIMEVAKLDEGEYTCIAKNKAGESEQELSLRVFV
KPKITFLLNQSTSEMEEQVTLTCEASGDPTPTINWSFGLRTFTEGEQAHLNRIYQASWTR
PEQHKSLDGNVVVRSDARVSSLTLKYAKFTDAGQYLCSARNAIGVDSQPAYLEVRYAPKI
QGSVTVYTWEGNAANISCEVLAHPSDVSILWLRDGFQLPNANVTKAKVFQSPTASYLEVT
PESENDFGSYNCTASNEMGTESKEFLLIQADVPSAPSLGEVEPFSSSARVEFQEPDATGG
VPVLRYRAEWKTVGRGSWVQRVYEVHGGALSEVTITGLKPETNYEVKMSAINGKGEGETS
PALVFKTEPVRYSYANGIFHFFTEDSEGEPEPPKLEGTLQTKGNSLKVNWIKQDDGGSPI
THYLVRYKPKRQADWKPEIRLPSGSEYVVLSGLEWNMEYDVFVVAENQQGKSQPGTLTFR
TSPEPAAIPDIDGESALSTGLMAGILILAFVLLLLAVDVTCYFTNKCGLIMCLCGKPGSG
AKGHNLEQGKAAFLKDESKEPIVEVRTEVECTANHNAGGPTEPNETTPLTEPEKIFGEEK
SKVEESEVKTALSEVTTEHNDVTQTNASDSKA
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgctccacgcaaaggatatccttttagccttccttcttgtgggctctacagtttgtctg
gaagtggagatcacccccacccagggagagatcagtgttggagagtccaagttctttctg
tgtgaagttgttggagtagcaaaggagattgactggtattcgccgagcggggagaggata
gagcccaacaaaccagagatcaccgtaacccgaaacgacgagtcctcgtccaccctcacg
ctctacaaggccggggtggacagcgctgggacctacaagtgtctggccaccaacggagac
cagtcagcagaagccaccgtcaacgtcaagttcttccaaaggatcaccttcaagaacgcc
ccctccccccaagagttcaatgaaggggacaacgccaacatcgtgtgtgatgtcatcagc
tcccctccgcccaccatcatctggaaacacaaaggagctaagattcagatggagaaggat
gtccgctttaagatcctgcccaacaaccacctgcagatccgaggcatcaagaagacggac
gaggggtcttacacatgtgagggccgcctcatggcccggggagagatcgacctcaagatc
atcagggtcatcgtcaacgtgctccctaccatccgggtgtggcagtctgaggtgaatgcc
acagcaggcgtggggcagtctgccatgttgacctgtgcggctgatggatacccagagccc
atggtgacctgggcaagggccggtgttctgctggagtcaggagagaagtacagctttaat
gaggacggttcagagatgaccatcatggaggtggccaagctggatgagggagagtacacc
tgcatcgctaagaacaaggctggggagagcgaacaggaactcagcctcagagtgtttgtg
aaacctaagatcaccttcctgctgaaccagagcacgtctgagatggaggagcaggtgact
ctgacctgtgaggcgtcaggggaccccacccccaccatcaactggagcttcggcctgcgc
accttcactgagggagagcaggcacatctaaacaggatctatcaggcctcttggactcgg
cccgagcaacacaagagtctggatgggaacgtcgtagtgagaagtgatgctcgtgtgtcc
tccctcacgctgaagtacgccaagttcactgacgctggccagtacctctgctctgcacgc
aacgccatcggagtggattctcaacccgcctacctggaagtccgctatgcccctaagatc
cagggctcagtgacagtgtatacctgggagggaaatgcagctaacatcagctgtgaggtc
cttgcccaccccagtgacgtgtccatactgtggctgagggacgggtttcagcttcccaac
gctaacgtcaccaaagccaaggttttccagagccccacagccagctacctggaggtcacc
ccagagtctgagaatgactttgggagctacaactgtactgcttccaatgagatgggcaca
gaatccaaggagttcctcctcattcaggctgatgtcccgtcagccccgtccctcggggag
gtggaaccgttctccagctcagccagggtggagttccaggagcctgacgccaccgggggt
gtacccgtcctcaggtaccgggccgagtggaagactgtgggcaggggcagctgggtgcag
agggtctatgaggtccatggaggagctctgagtgaggtaaccatcacaggcctgaagcct
gagaccaactatgaggtgaagatgtcagccatcaacggcaagggagagggtgaaactagc
cccgctctcgtcttcaagacagagcctgtccgttattcttacgcaaatggcatttttcat
tttttcactgaggactcagaaggggaacctgaaccgcctaagctggagggaacactccaa
actaaaggcaactccctcaaagtcaactggatcaagcaggacgatggaggctcacccatc
acacactacctagtccgctataaaccaaagcgtcaggccgactggaagccagagatccgg
ctgcccagtggcagtgagtatgtggttctgagcggactggagtggaacatggagtacgat
gtgtttgtggtggcagagaaccagcaggggaagtcccaacctggaaccctgaccttcaga
acctctccagaacctgctgccatcccagatatagacggtgagtctgccctctccacgggc
ctcatggcagggatcctcatcttggccttcgtcctgctgctcctggctgtggatgtcacc
tgctacttcaccaacaagtgtggcctcatcatgtgtctgtgtggcaagccaggcagcggg
gccaagggacacaacctagaacagggcaaggctgcattcctaaaggacgagtccaaagag
ccgatagtggaggtgaggacagaggttgagtgcacagccaatcacaacgcaggaggaccc
acagaacccaatgagaccacaccccttacagagccagagaagatatttggagaggagaaa
agtaaagtggaggagtcggaggtgaagacagccctgtcagaggtgaccacagaacacaac
gatgtcacacagacaaacgccagcgacagcaaagcatga
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