Coregonus clupeaformis (lake whitefish): 121559873
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Entry
121559873 CDS
T08357
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like isoform X1
KO
K07466
replication factor A1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03030
DNA replication
cclu03420
Nucleotide excision repair
cclu03430
Mismatch repair
cclu03440
Homologous recombination
cclu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121559873
03420 Nucleotide excision repair
121559873
03430 Mismatch repair
121559873
03440 Homologous recombination
121559873
03460 Fanconi anemia pathway
121559873
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121559873
03032 DNA replication proteins [BR:
cclu03032
]
121559873
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121559873
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
121559873
DNA replication proteins [BR:
cclu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
121559873
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
121559873
MMR (mismatch excision repair)
121559873
DSBR (double strand breaks repair)
HR (homologous recombination)
121559873
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
121559873
NCBI-ProteinID:
XP_041728879
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Position
5:complement(6841837..6904220)
Genome browser
AA seq
608 aa
AA seq
DB search
MTNMLTKGAIEALTKGSNDLQNPILQLVNIRKIDGGSGPARFRLMMSDGQHSMSSFMLST
QLNQMAEDNRLAPNCICQLKRNVTNVLKDGRRVVVILDMEVVKSADEVAGKIGEPTPYVE
GQSKAPQSAPNPSVHPLQPQNGIDGSMNKGPSREFGGKKAMPPSAMPSTPGGSSKVVPIA
SLNPYQSKWTIRARVTNKSGIRTWSNSRGDGKLFSMEIVDESGEIRVTAFTQEVDKFYSI
IETGKVFYISKGSLKIANKQYSSLKNDYEMTLNGESTIIPCEDTQDVPMVQCNFVSIADL
EAREKDTILDVIGVCKSVTDVTRLTTKNNREVSKRTLNLMDQSGKLVEVTLWGEEAENFD
GSGQPILAIKGAKLSDYGGRSLSASFSSTVMINPDIPEAYKLRGWYDKEGHSMDGQSLTE
ARTGGGGGGNTNWKTLADIKTENLGHGDKADYFSCIATIVYIRKENCLYQACPSQDCNKK
VVDQQNGMFRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQ
LKDSNEAAFEEIFQQANFHTFVFRNRVKLETYNDESRIKATVMEVKPVDHKEYSKRLIMN
IRKMAAPQ
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgactaacatgctgacgaagggagcgatagaggccctaaccaaaggctctaatgattta
caaaaccccatacttcaattagtgaacatccgtaaaattgatggaggcagtggaccagcc
cgctttcgtctgatgatgagtgatggacaacactcaatgtcctcgttcatgctctccacc
cagctcaaccaaatggctgaggacaaccgactagccccaaactgtatctgtcagctgaag
aggaacgtgaccaatgtcctgaaggatggacgccgtgtggtggtcatattggacatggag
gtggtgaagtctgctgatgaggtggctggaaagatcggagagcccacgccttacgtggaa
ggtcagagtaaagccccacagtcagcccccaatccctcagtccaccccctgcagccccag
aatggaattgatggctccatgaacaaaggtcccagcagagagtttggggggaagaaggcc
atgcctccgtctgccatgcccagcactcctgggggatcctccaaagtcgtgcccatcgcc
agcctcaacccctaccagtcaaagtggaccatccgagcccgtgtcaccaacaagagtggc
atccgcacctggagcaactctcgtggggacggcaagctgttctccatggagattgtggat
gagagtggagagatcagagtgactgcctttacccaggaggtggacaagttctacagcatc
attgagactggcaaggtgttctacatctccaagggatccctgaagattgccaacaagcag
tactcgtccctgaagaatgactatgagatgaccctgaatggagagtccaccatcatcccc
tgtgaggacacccaggacgtacccatggtgcagtgcaacttcgtctccatcgccgacctg
gaggcccgagaaaaggacaccattttggatgtgattggagtgtgtaagagcgtgaccgac
gtgacccgcctcaccaccaagaacaaccgtgaggtctccaagaggacgctcaacctgatg
gaccagtctggtaaactggtggaggtcaccctgtggggagaggaggcagagaactttgat
ggctctgggcagcccatcttggccatcaaaggggccaagctgtcggactatgggggcaga
tctctgtctgcttcgttcagcagcaccgtcatgatcaaccccgacatccctgaggcatac
aagctgcggggctggtatgacaaggagggccactctatggatggccagtctctgacggag
gcgaggacaggtggaggaggaggagggaacaccaactggaagaccctggctgacatcaag
acggagaacctcggacacggagacaaggcagactacttcagctgcatcgccaccatagtg
tacatccgtaaggagaactgtctgtaccaggcgtgccctagtcaggactgcaataagaag
gtggtggaccagcagaacggcatgttccgctgtgagaagtgtgacaaagagttccccaac
ttcaagtaccgactcatcctctctgccaacatagcagactacggggacaaccagtgggtg
acctgcttccaggagagtgctgaagccatcctgggacagaacgctgcttacctagggcag
ctcaaggactcgaatgaagctgccttcgaggagatctttcagcaggccaacttccacacc
ttcgttttccgcaacagagtcaagctggagacctacaatgacgagtcccggatcaaggcg
acggtgatggaggtgaaacctgtggaccacaaggagtacagcaagagactcatcatgaac
atcaggaagatggctgccccccaataa
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