KEGG   Coregonus clupeaformis (lake whitefish): 121559964
Entry
121559964         CDS       T08357                                 
Name
(RefSeq) DDB1- and CUL4-associated factor 13-like
  KO
K11806  DDB1- and CUL4-associated factor 13
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:cclu03009]
    121559964
   04121 Ubiquitin system [BR:cclu04121]
    121559964
Ribosome biogenesis [BR:cclu03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    121559964
Ubiquitin system [BR:cclu04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     121559964
SSDB
Motif
Pfam: Sof1 WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 WDR55 EIF3I Beta-prop_EML Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st WD40_RFWD3 Beta-prop_IFT140_1st ANAPC4_WD40 eIF2A KNTC1_N Beta-prop_WDR19_1st
Other DBs
NCBI-GeneID: 121559964
NCBI-ProteinID: XP_041728938
LinkDB
Position
28:19994595..20012241
AA seq 445 aa
MKVKVLSRNPDDYVRETKLDIQRVPRNYDPSLHPFEVPREYTRALNATKLERVFSKPFLA
SLDGHRDGVNCMAKHPKSLSTILSGSCDGELKVWNLTKRECVRTLQAHEGFVRGMVVRFC
GTSFFTVGDDKTIKQWKMETPGYGEEEEPLNTILGKSVFTSIDHHQKEGVFVTCGQQVDI
WDEQRSSPIRSFSWGVDSFSCVRFNPVETELLASCASDRSIVLYDMREATPLKKVIMSMR
SNTLCWNPMEAYNFTCSNEDYNLYTYDMRYLDKPFTVHMDHVSAVLDVDYSPTGKEFVSA
SFDKTIRIFPKDSGHSREVYHTKRMQHVISIKWSSDNKYILSASDEMNIRLWKANAAEKL
GLLAPREKAAVNYSQKLKDKFQHHPQIRRISRHRHLPKSIYSQSKELRVMKEARRRKERN
VRKHSKPGSMPVVTEKEKHVVTVVK
NT seq 1338 nt   +upstreamnt  +downstreamnt
atgaaagttaaagtcctctccaggaatccggacgactatgtccgtgagacgaagttggat
atccagcgtgtaccaagaaattacgacccgtccctccatccgttcgaggtgccaagagaa
tacacccgtgccctgaatgcgaccaagctggagcgcgtgttctccaagccgttcctggct
tctctggacggccacagggatggggtgaactgcatggccaaacaccccaaaagcctctcc
acaattctgtccggctcctgcgatggagagctgaaggtgtggaatctcaccaaacgtgag
tgtgttcgcacactccaggcccatgaaggctttgtcagggggatggtcgtccgcttctgt
ggcacctccttctttacggttggtgatgacaagactatcaaacagtggaagatggagact
ccaggctacggagaggaagaggaacctctcaatactattcttgggaagtctgtgttcacc
agcatcgaccaccaccagaaggagggtgtgtttgtgacgtgtggccaacaggtggacatc
tgggacgagcagcgcagcagccccatccgctccttttcctggggcgtggacagtttcagc
tgcgtccgcttcaaccctgtagagactgaacttctagcaagttgtgcctctgacagaagt
attgtgctgtatgacatgagggaagctacacctcttaaaaaggtaatcatgagcatgagg
agcaacactttgtgctggaatcccatggaagcttataacttcacctgctctaatgaagat
tacaatctgtatacatatgatatgaggtacctggacaagcctttcaccgtccacatggac
catgtctcagccgtgctggatgtagactactctccaacaggcaaggagtttgtctcggcc
agctttgacaagaccatccgcatcttccccaaagacagtggccacagcagggaggtgtac
cacaccaagcgcatgcagcacgtcatctccataaagtggtcgtcagacaacaagtacatc
ctgagtgcttcagatgagatgaacatcagactgtggaaggccaacgctgctgagaagttg
ggattgctggctcctagggagaaggcagctgtgaactacagccagaagctgaaggataag
ttccagcatcaccctcagatccgccgcatctcgcgccaccgccacctgcccaagtccatc
tacagccagagcaaggagctgcgtgtcatgaaggaggctcgccgcaggaaggagaggaac
gtacgcaagcacagcaagcctggctccatgcccgtggtgacggagaaagagaaacatgta
gtcaccgtggtgaaatag

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