Coregonus clupeaformis (lake whitefish): 121560048
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Entry
121560048 CDS
T08357
Name
(RefSeq) serine/arginine-rich splicing factor 1B-like isoform X1
KO
K12890
serine/arginine-rich splicing factor 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040
Spliceosome
cclu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121560048
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121560048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121560048
Spliceosome [BR:
cclu03041
]
Common components
Common spliceosomal components
SR proteins
121560048
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_3
RRM_7
Nup35_RRM_2
CoV_nucleocap
Motif
Other DBs
NCBI-GeneID:
121560048
NCBI-ProteinID:
XP_045074073
LinkDB
All DBs
Position
6:complement(9610898..9616015)
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AA seq
252 aa
AA seq
DB search
MSGGVVRGPAGNNDCRIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFIEF
EDPRDADDAVYGRDGYDYDGYRLRVEFPRSGRGGGRGGFGGGGGVGGAPRGRYGPPSRRS
EYRVIVSGLPQSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTK
FRSHEGETAYVRVKVDGPRSPSYGRSRSRSRSRSRSRSAASRSRSNSRGGGTRGGRGSPR
YSPRHSRSRSRS
NT seq
759 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggaggcgtcgtgcgaggccctgcaggaaataacgattgtcgaatttacgtcgga
aatctaccccctgatattcggaccaaagatgtcgaggacgtgttttacaaatacggagct
attcgagatatcgatttgaaaaatcggagaggaggacctccctttgcctttatcgaattt
gaagatcccagggatgccgacgatgccgtgtacggacgagacggctatgactacgacggt
tatcggctgcgagttgaattccctcggagcggcaggggtggggggagaggcggcttcggt
ggtggagggggggttggtggcgcccctagaggcagatacgggccgccatccagacgctcc
gagtacagggtcattgtctcagggcttccccagagtggcagctggcaggacctgaaggat
cacatgcgtgaggctggggatgtatgttatgctgatgttttcagagatggaactggggtt
gtggagtttgtgcgcaaagaagacatgacctacgctgttcgaaagctggataacaccaaa
ttccgatcacacgagggagagaccgcttacgttcgcgtgaaagtagatggtccccgcagc
ccgagctatggaagatcacgttccaggagccgcagtcgaagcaggagccgcagtgcagcc
agtcgcagccgcagcaactctcgcggtggtggtacccgtggtggcagaggatctcctcgc
tactctcctcgccatagccgctctcgctcccgttcctaa
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