Coregonus clupeaformis (lake whitefish): 121560077
Help
Entry
121560077 CDS
T08357
Name
(RefSeq) hepatocyte nuclear factor 1-beta-A isoform X1
KO
K08034
transcription factor 2, hepatocyte nuclear factor 1-beta
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121560077
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
121560077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1B_C
HNF-1_N
Homeodomain
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
121560077
NCBI-ProteinID:
XP_041729063
LinkDB
All DBs
Position
6:complement(9551747..9570818)
Genome browser
AA seq
584 aa
AA seq
DB search
MFSKMVSKLTSLQQELLSALLDSGVTKDVLIQALDDIDPSRNGFGVKLENLQMSPPSSKI
NGNDSDSKPVFLTLTNGHSKGKLSGDEGSEDGDDFDTPPILKELQSLNTEEAAEQRAEVD
RILAEDPWRAARMIKGYMQQHNIPQREVVDVTGLNQSHLSQHLNKGTPMKTQKRAALYTW
YVRKQREVLRQFNQAVQGSGSNMTDKGGQDQVLFFFPEFNPPGQGMGPQGEEVGSEPSCK
KMRRNRFKWGPASQQILYQAYERQKNPSKEERETLVEECNRAECLQRGVSPSKAHGLGSN
LVTEVRVYNWFANRRKEEAFRQKLAMDAYPIPTHSMNPLLSHSHSSPHHHSSQTSTSPPS
KMQVRYSQQGPGEVSSSTTISHHGSMATSQSVLQQVSPGGLDPSHSLLSPDTKMMSVSGG
GLPPVSTLTNIHSSLHTHQQTQNLIMPLSGVMTIAQSLNTSQSQSVPVINSVAGSLAALQ
PVQFSQQLHSPHQHGLMHQSPSHMSQQPFMATVTHSHSQYLPLMYPHKQEPPQYSHQSRF
PSAMVVTDTNSLSTLSSMSSSKQDSTVNKMVQLGGLSWCPLQAW
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgttctcgaaaatggtgtccaagttgacatctctccaacaggagctcttgagcgccttg
ttagattccggagtcaccaaagatgttctgatccaagcgttggacgatatcgaccctagc
cggaatggctttggagttaagttggagaatctgcagatgtctccgccaagttctaaaatc
aacggaaatgattcggattcgaagccagtatttcttacgttgaccaatgggcacagtaag
ggcaaactgtcgggagatgaggggtccgaggacggggacgatttcgataccccaccgata
ctgaaagaactccagtcgcttaacactgaggaagcagcggaacagagggcagaagttgac
cgaatattagctgaggacccgtggcgtgccgcccgcatgatcaaaggctacatgcaacag
cacaacataccacagcgcgaggtggtggacgtaaccgggctaaatcagtctcacctctca
cagcacctcaacaaaggcacgcccatgaaaactcagaagcgagcggcgctctacacctgg
tatgtcaggaaacagcgggaagttctcagacaattcaaccaggcagtgcaaggttctggc
agcaatatgaccgacaaaggaggtcaggatcaggtgctgtttttcttcccagagtttaac
cctcctggtcagggtatggggccacaaggggaggaggtgggctctgaaccctcctgcaag
aaaatgagacggaaccgtttcaaatgggggcctgcgtcccaacagatcctctaccaggcc
tatgaaagacagaagaaccccagcaaagaggagcgggagacgctggtggaggagtgcaac
agggctgagtgtctccagagaggggtgtctccatctaaagctcatgggctgggctctaac
ctggtcactgaggtacgggtctataactggtttgccaaccgtcgtaaggaggaggccttc
cgtcagaagctggcgatggatgcctaccccatacccacccacagcatgaaccctctcctg
tctcacagccacagctccccacatcaccacagctcccagaccagcacatccccccctagt
aagatgcaagtgcggtacagccaacagggacccggtgaggtcagctcctcgacgaccatc
agtcaccacggcagcatggcgaccagccagtcggtgttacagcaggtgtctccgggcggc
ttggaccccagccacagtctgctgtcacctgacaccaagatgatgtctgtgtcaggtgga
ggcctgccacctgtgagcacgctgaccaacatccacagctccctccacacacaccagcag
acacagaacctcatcatgcctctctctggagtcatgaccatcgcacagagtctgaacacg
tcgcagtcccagtcggtgccggtgatcaacagcgtggcggggagccttgcagcgctgcag
ccggtgcagttctcccagcagctccacagtccccaccagcatggcctgatgcatcagtcc
cccagccacatgagccagcagcccttcatggccaccgtgacgcactcacacagtcagtac
ctgcctcttatgtaccctcacaagcaggagccaccgcagtattcccaccagtcacggttt
ccctcagccatggtggtgacagacaccaacagcctcagtactctcagctccatgtcatcc
agcaaacaggattctaccgtaaacaagatggtgcaactggggggtctctcctggtgtcct
cttcaagcctggtga
DBGET
integrated database retrieval system
