Coregonus clupeaformis (lake whitefish): 121560298
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Entry
121560298 CDS
T08357
Name
(RefSeq) exosome complex component CSL4 isoform X2
KO
K07573
exosome complex component CSL4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121560298
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121560298
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
121560298
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
121560298
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
SPK
S1_RRP4
Motif
Other DBs
NCBI-GeneID:
121560298
NCBI-ProteinID:
XP_041729239
LinkDB
All DBs
Position
Unknown
AA seq
200 aa
AA seq
DB search
MSPMKLCVPGDRLCSTEDCMPGTGVYLRHGYIYSSLAGYVLRKNEGEELPVISVVRETEA
QLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRKEDVRATEKDRVETYKS
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGAQMVPISSISVFPSSQEPRW
YLSVVYLCFPPLRSPDGAYQ
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccatgaagctgtgtgttccaggtgataggctatgcagcacagaggactgtatg
cctggtactggggtgtacctacgacacggctacatctactcctcgctagcaggctacgta
ctcaggaagaacgaaggagaggagctaccagtcatctctgtggtaagagaaacagaggcc
cagctactgccagatgtaggagccatagtcacctgtaaggtgaccagtatcaaccccagg
tttgccaaggtccacatcctctacgttggttccacgccactgaaggaccgctttagagga
accatcaggaaagaagatgtacgagcaacagaaaaagacagggtggagacgtataaaagc
ttccgtcctggagacatcgtcctggctaaagtcatctccctgggagacgtccagtccaac
tacctgttgaccacagccgagaacgagctgggggtggtggtagcccacagtgaagcagga
gcccagatggtgcctatcagtagtatatctgtgtttccctcctctcaggagcccagatgg
tatctatcagtagtatatctgtgtttccctcctctcaggagcccagatggtgcctatcag
tag
DBGET
integrated database retrieval system
