Coregonus clupeaformis (lake whitefish): 121560588
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Entry
121560588 CDS
T08357
Symbol
fip1l1b
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121560588 (fip1l1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121560588 (fip1l1b)
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
121560588 (fip1l1b)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
121560588
NCBI-ProteinID:
XP_045067021
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Position
35:complement(38975192..39009959)
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AA seq
606 aa
AA seq
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MSAEEAADKTTPADASAGDAGEAGDEEEEWLYGDDDEKAEEEEAKLTAAVSAPAPESDEA
VTTGNGVEAQEKEPGDDDSDSDSDDDDDDVRVTIGDIKTGAPQYTTYGVAPVNLNIKTAG
ARPYGTVGNKLKGVDLEAPGNINGVPVLEVDMESFEEKPWRKPGADLSDYFNYGFNEDTW
KAYCDKQKRLRMGLEVVNISSTTSKITVQQGRTGNEKEVGLPIHTSKPDFPSPASLYKSS
MNMNTNRISPPQWTAPPVQDMSYYTKPSGTIDVIGGGTATISRVEGRRRHNLEGNNIQVI
SEHSSSDAEQNPNKMPPFFPPGPLPPNIPPPPFLPPPPNVSQAPPLIPPPRIPMNVPPPG
FPPPSGPPPSLIPTLDSSGHPGGYDGRPVPPYPFPTGGFPPPMSGGYPPPMPGAVSPWPP
MMDQSKQWDYYPPGPGPGPRLEDKREKGRERPRERPHEREREREHSPSAMAYNSDEERYR
GYREYQAERGYSSGDRGGGDRGGGDRGGVDRGGGDRGGGDRGGGGGGERHRERSSREKEE
RHRERRHREKEEGRHKSSRSSSRRRHDSEEGDGHRRHKHKKSKRSKEGKEPGDDLGGDQE
NQDTME
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggaagaggcggcagacaaaacaaccccggccgacgcgagtgcgggagatgcc
ggagaagccggagacgaggaagaagagtggctctacggagatgatgatgagaaagctgag
gaggaagaggccaaactaaccgcagctgtcagtgctcctgctccagagtcagatgaggcg
gttactacgggcaacggagtggaagctcaggagaaggagccaggagatgatgacagtgat
agcgacagtgacgatgatgacgatgatgttcgtgtcaccatcggagacatcaagaccgga
gccccacagtacacaacgtatggagtggctcctgttaacctgaacataaagacagcagga
gccagaccctacggaacagtagggaacaagttgaagggtgtggatctggaggccccgggc
aacatcaatggagtcccagtactggaggtggacatggagtcatttgaggagaaaccctgg
aggaaaccaggtgctgacctgtctgactattttaactacgggttcaacgaggacacgtgg
aaggcctactgtgacaaacagaagaggctgaggatgggcctggaggtcgtcaacatctcc
tccaccaccagcaaaatcactgttcagcagggcaggacagggaatgagaaggaagtgggt
ttacccatccacacgtccaaacctgacttcccctctccagccagcctctacaagtcatcc
atgaacatgaacactaacaggatctccccccctcagtggaccgctccccccgttcaggac
atgtcctactatacgaagcccagtgggaccatagacgtgatcggaggagggactgctacc
atcagcagagtggaggggagacgaagacacaacctggaggggaacaacatccaggtgatt
tcggaacactcgtcgtcggacgctgagcagaaccccaacaagatgccccccttcttcccc
cctggccccctcccccctaacatccctcctccccctttcctcccccctcctcccaacgtc
agccaggctccacctctcatccccccaccaagaatacctatgaatgtccctcctcctggt
ttccctcctcccagcggcccccctccctctctcatccccactttggacagcagtggccat
ccaggtggatatgatggacgtcccgttccaccataccccttccccacaggtggcttccct
cctcctatgtcaggtggctaccctcctcctatgccaggtgcagtgtctccatggcctcct
atgatggaccaatctaaacagtgggactactaccctccaggaccaggaccaggacccaga
ttggaggacaagagggagaaggggagagagagacccagggagagaccacatgagagggag
agggagagagagcacagcccctccgctatggcttacaacagtgacgaggagcggtaccgc
ggttaccgtgagtaccaggcggagcgtggctatagcagcggtgaccgtggaggcggtgac
cgtggaggcggtgaccgtggaggcgttgaccgcggcggcggtgaccgtggaggcggcgac
cgtggcggtggcggagggggagagcgtcacagagagaggtcgagccgtgagaaggaggag
agacacagagagagaagacacagagagaaagaggaggggagacacaagtcatcacgcagt
agcagcaggaggagacatgatagtgaagaaggagacggtcacaggagacacaaacacaag
aagagcaagagaagcaaggagggcaaagaacctggtgatgacctgggaggagaccaggag
aaccaggacaccatggagtga
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