Coregonus clupeaformis (lake whitefish): 121560773
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Entry
121560773 CDS
T08357
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121560773 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121560773 (patl1)
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121560773 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
121560773 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
121560773
NCBI-ProteinID:
XP_041729616
LinkDB
All DBs
Position
Unknown
AA seq
819 aa
AA seq
DB search
MFRFQSLDEDCTLEKEEGLVEEEDEIDQFNDDTFGDGAIDDDWQEEHKRLAELEERKNDG
LGGLGLGGLGMGGMGGGGGGEASTVHLPPPASRIPHPSSLPPPHHALSSIPPPGLEERGG
GDLAESLAMLILGADPAIASVGGPAGPGDRSSGLPAPPSMPQQQQHHHHPSQLPPHHQLT
PSGLPPGPPHPSLLSYQQHQHLIRRGAAPMQQMNSHNIWENNMGFGPVSVTPGLITQMED
SPLMSIIKEVGLPNRPPPMMSEDGRDLSERAPPPRSSSPVIGSPPVRAVPIGTPPKQPMS
HAMNHQQQIHHPTAVHVRAPVHHQHRYPPSFPERISPNTLLNIANSPLCRPPFPAGVGPV
LSQIQRAQMLNSQVAGFPRGCQGPPLLPGGGGFRPFFGQPPPHRMGPHPGGPPPNHNHVP
CPIIRHNTTHLHPQHRRMLTQRMQSRGGERGGRVGDWRSRDPYSNLMTQREKEWVAKIQM
MQLQSTDPYLDDYYYQNYFEKMEKRQERDRDGVRKEHTTKLITPQVAKLEHIYRPVQFAG
SLGKLTVSSVNNPRKMIDTVVTSRTDDEEKREKQVWNKRRQILYTVEKMYSLLLEVQDFE
KRFMQTPEEQREALLERHKTHTLQLYSSLKEKEWDDRVSDEQCLLIMSVRKGKRLISRLI
PFLPPLQAATVVMGIARNLPALAKKDKQDQVLCWLVEPVAVVISSLSSAVLTDLLQELQG
SEGQLSKVLQNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRWTELVFSVTRELLNVPPS
SLSPPLFTPPNLLSLFSRYVDRQRLELLQEKLQISTLSR
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgttccgttttcagtcccttgatgaagattgtaccctggagaaggaggaggggctggta
gaagaagaagatgagattgaccagtttaatgacgacaccttcggagacggagccatcgat
gatgactggcaggaggagcacaagcggctcgccgagctcgaagaacgaaagaacgacgga
ctcggaggtttaggactagggggactagggatggggggaatgggaggaggaggaggagga
gaagcttccaccgttcacctccctcctcccgccagtcgcatcccccacccgtcgtccctc
cccccaccccatcacgccctctcttcgattccccctccgggcctggaggagaggggggga
ggcgacttagccgagtccctagccatgttgatcttaggggcggacccggccatcgccagc
gtgggtggtccagccgggcctggtgaccggtccagtggtctccctgctcccccctccatg
ccccagcagcagcagcaccaccaccacccctcccagctccctccccaccaccagctgacc
ccgtctgggctgccccctggcccaccgcacccctccctgcttagctaccagcagcatcag
cacctcatacgccgaggggcggcccccatgcaacagatgaactcacacaatatctgggag
aacaacatgggatttgggcctgtgagcgtcacccctggactaatcactcaaatggaggac
agtccacttatgtccatcatcaaagaggtggggctgcccaatcggcctccgccaatgatg
agcgaggatgggcgggacttgtcggaaagggcccccccgcctcgctcgtcctctcccgtg
attggtagcccaccagtgagggcggtgcctatcgggactccgcccaagcagccgatgagt
catgctatgaatcatcagcagcagatccaccaccccaccgccgttcatgtgcgagccccg
gtccaccaccaacaccgctaccccccttccttccccgagcgcatctcccccaacaccctc
ctaaacatcgccaactctcctctgtgtcgtcctccgttcccggctggagtgggtcccgtt
ctgtcccagatccaacgcgcccagatgctcaactctcaggttgctggcttccccaggggc
tgtcagggtcccccgttgctgcctggcggcggaggcttcaggcccttcttcggccagccc
cctccccacaggatgggtccccaccccggcgggccccctcccaaccacaaccacgtcccc
tgtcccatcatccggcacaacaccacacacctgcacccccagcaccgccgcatgcttacc
cagaggatgcagagtagaggaggtgagcgtggcgggcgtgtgggggactggcggagcagg
gacccctacagtaacttgatgacccagagggagaaggagtgggtggccaagatccagatg
atgcagctgcagagcactgatccctacctggatgactactactaccagaattactttgag
aagatggagaagaggcaggagagagacagagacggcgtgaggaaggagcacaccaccaaa
ctcatcaccccccaggtggccaagctggaacacatctacagaccagtgcagtttgcaggc
tcgctgggtaagctgactgtgtccagcgtcaacaaccccaggaagatgatcgacacggtg
gtgaccagtcgcactgatgacgaggagaagagagagaaacaggtgtggaataagagacgg
cagatcctctacactgtggagaagatgtacagtctgctgctggaggtgcaggactttgag
aagcgcttcatgcagacgccggaggagcaaagagaggccctgctggagcggcacaaaacc
cacaccctgcagctctacagctccctcaaggagaaggagtgggacgacagagtgagtgac
gagcagtgtctgttgatcatgtcggtgcggaagggaaagcgcctcatctccaggctcatc
cctttcctgcctccgctgcaggccgccaccgttgtcatggggattgcccggaacctgccc
gccctggcaaagaaagacaaacaggaccaggtgctgtgctggttggtggagcccgttgcc
gtggtgatctcatccctatctagcgccgtcctcacagacttgctgcaggagctgcaaggc
agcgagggtcaactgtccaaagtgttgcaaaataagtttggtgtgacgctgctttacctg
atcctgagtgaaggagagagaatgcagagctccgaccccaactgtcaactcatggatgac
aatcgatggacggagttggtgttctctgtgaccagggagctgctcaacgtgcccccctcg
tccctatcccctcctctcttcacccctcccaacctgctctctctcttctcgcgctacgta
gaccgacagaggctggagctgctgcaggagaagttacagatctctacattgtccaggtag
DBGET
integrated database retrieval system
