Coregonus clupeaformis (lake whitefish): 121560873
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Entry
121560873 CDS
T08357
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04270
Vascular smooth muscle contraction
cclu04625
C-type lectin receptor signaling pathway
cclu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
121560873
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
121560873
09153 Circulatory system
04270 Vascular smooth muscle contraction
121560873
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121560873
Membrane trafficking [BR:
cclu04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
121560873
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
NTS
Pept_S41_N_bact
PH
Motif
Other DBs
NCBI-GeneID:
121560873
NCBI-ProteinID:
XP_041729636
LinkDB
All DBs
Position
5:9021572..9110029
Genome browser
AA seq
1461 aa
AA seq
DB search
MSDTQSSITDRFPNKANRSSSIFSKDHPPDKKPKSDKPAVSASHEFDPTDVLVQKSDFLL
AEGKPESCGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKEDGAAERAGVQTGDRIIKVN
GTLVTHSNHVEVVQLIKSGSYVALTVLGRPPGLPQIPLSEGEAKLGFPGAQTRSSSVTSP
NSPGQPTGERPYSPHDRITSPLLRWEENNSVHNQKVDILQKMLSKEQQDLQAMKEEYSRN
PTPKLLKDIQEAKKHIPQLQGQLSKATGGTQDAMQLGDGDDGSMVDMDHTPSSRGDSSND
LSWSSSTMSPDLRGFAPASPESLYQRDLLSYHSPKSTPQDRFNSCHSPDPEDTPDLDSLS
PSTVSSPFSRFVSQIIGAEDDYFDSDQEQVNGQCSCFQSMELLKSRPAHLAAFLHHVVSQ
FDPAPLLCYLYADLCKQTNSKETRRVFMDFHNFFIDRGANLKVVVPESISSDLDRRRTEL
IPEELNRQYVQMVQDTLLPDIQRNLEDFRQKRSMGLTLAEGELARLDTERVRDRVALERE
RSCAENIITKIEDVLLTTQSTEEEKCTTMQYVILTYMKHLGVKVKEPRGLESKWVRINFL
PKIKKSIKTEKEGGEEKVKRTRFPSILGPPRRPSRVDPTSVGKAMDLNKPRPQKQLSQPC
LGALEHLEAGRLRASQSSEGSDLTHSSSTNATSPPNSTTNSQVSDGGSRDSEFVVTSNSA
FPKLSEGLGDLDSLQNTPNTHFDYSLSPYSLDQLQEEDRESGLDGLGSTEVQSEDDQGGT
DSEHDPLNWQQLVGREVLAGLRPHEIKRQEVINELFYTERAHLRMLKVLDNIFYQKLTRE
AILPPADVQTIFTNLEDIVQLHVLISEQMATIRKRNETSVIDQIGDDLLSWFSGGEEEKI
KQAVGTFCSNQPFALELIKSRQKKDSRFTSFMQEAESNRLCRRLQLKDIIPVEMQRLTKY
PLLLENIAKYTDDTVEKEKVKKAGDCCRKILNHVNQAVKESENKQRLEDYQRRLDLSSLK
QTENPMISELKNLDLTKKKMVHEGPLSWKVNKDKTIELYTLLLEDILVLLQKQDERLILK
CHSKNLSGTADTKHIFSPIIKLNAVLVRSVATDNKSFFVLSMSDNGAQIYELMAQTVSEQ
RMWQRQITQRADAMKVKPHSIIHLPQTDGERDGVEIITAGVARLSKDPDRISSGSSQSID
KECSAAPCGVMQTPLPDANLFVGLKAEEEPSREEGLYGDPDRANSLPFRMAVDGLSESEG
LGFSTSRADDALKTLSALKQVLVTQLMSQEECERAGRTSSGGGRLLRTTSLRTPVDSRAR
VAVQNGSGRCTQASHPEDPAQDLVSGDTGFFESPEDYAGYLVLEGYGGLGESSTDDDLQS
TGKQLSASRGCGAGDSGISLRFSSASQAGSICSFSRQVLSHLRNLQTNLNHLKEVEAKYH
SLLRLRPARSSTDVEDNKDKR
NT seq
4386 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacacacagtccagtatcactgataggtttcccaataaagcaaacagaagcagt
agcattttcagtaaagaccacccccctgacaagaaacccaaaagtgataaaccggcagtc
tccgcttcacatgagtttgaccctacagatgttctggtgcagaagagtgactttcttcta
gcggaggggaagcccgagtcctgtgggcttgtccagcgatgtgtgatcattcagaaagat
gagaatggctttgggctgactgtgagcggagacaacccagtgtttgtgcagctcgtcaag
gaagatggcgctgcagagcgtgcgggtgtacagacgggtgaccggatcatcaaggtgaac
gggaccctagtaacacattcaaaccacgtggaagtagtacagctcataaaatcgggctcc
tatgtggccctcacagtgttggggcgacctcctgggttgccccagatccccctgtcggag
ggcgaggctaagttggggttcccgggggcccagacaaggtcatcctctgtcacctctcca
aactccccgggacagccaacgggggagcgcccatacagcccccatgaccgcatcacctct
cctctactgagatgggaagagaacaacagcgtacacaaccaaaaggtggacatcctgcag
aagatgttgtccaaggagcaacaagatttgcaggcaatgaaggaggagtacagcaggaat
ccaacgcccaaactactgaaggacatccaggaagccaagaagcacattccacagctgcag
gggcagctgagtaaggccactgggggaacacaggatgccatgcaattgggcgacggagat
gacggcagcatggtggacatggaccacacaccttcctccaggggggacagtagcaacgac
ctctcgtggagcagcagtaccatgtcccctgatctccgcggttttgcacctgcctccccg
gagagcctgtaccaaagagacttgttgtcctaccacagcccaaagagcacgccccaagac
cgcttcaactcttgccactcccccgacccagaagacactccagacctggactccctgtcc
ccctccactgttagcagccccttctcacgcttcgtctcccagatcatcggagctgaggac
gactactttgactctgatcaggaacaggtcaatggccagtgcagctgtttccagagcatg
gagctgctcaagtccagacctgcccacctggcagcattcctgcatcatgtcgtctcacag
tttgaccctgcaccgctgctctgctacctctacgctgacctgtgcaagcagaccaactcc
aaagaaaccagacgggtgttcatggacttccacaacttcttcatcgaccggggagctaat
ttaaaagtagttgttcccgagtccatctcctctgaccttgaccggcggaggacggagctg
atccctgaggagctgaacagacagtacgtccagatggtgcaggacaccctgctccctgac
atccagcggaacctggaggacttcaggcagaagcgcagtatgggcctaaccctggcagag
ggggaactggcccggctggacacggagcgcgtcagagaccgggtagcactggagagagaa
cgctcctgtgctgaaaacatcatcaccaagatagaggatgtcctgttgacaactcaatcc
acagaggaggagaaatgcactactatgcagtacgtcatcctcacgtacatgaagcacctt
ggcgtgaaagtcaaagaaccacgcggccttgagtccaaatgggtccgcatcaacttcctc
cccaagatcaagaagagcatcaagaccgagaaggagggaggggaggagaaggtgaaacga
accaggtttcccagcatcctcgggcctccacgccggccgagccgcgtcgaccccacgtcc
gtcggcaaggccatggacctcaacaagccgcggccacagaagcagctgtcccagccctgc
ctgggggccctggagcacctggaggcgggtcgcctgagggccagtcagtccagcgagggc
tcagatctcacacattcctcctctaccaacgccacctcgccacccaacagcaccaccaac
agccaagtctctgacggaggcagcagagactctgagtttgttgtgacctctaactctgcc
ttccccaaactgagcgagggtcttggagacctggacagtctacagaacactccaaacaca
cactttgactacagcctgagcccctacagcctggaccagctgcaggaggaggaccgggag
agcgggttggatggccttggctctacagaggtgcagagtgaagacgaccaaggaggaacg
gactctgagcacgaccccctcaactggcagcagctagtgggacgagaggtcctggccgga
ctcaggccccacgagatcaagagacaggaagtcattaacgagctgttctacactgagagg
gcccacctgcggatgctcaaggtgctggacaacatcttctaccagaagctcaccagagag
gccatactgcctcctgccgacgtccagaccatcttcaccaacctggaggacattgttcaa
ctgcatgttttgatatctgagcaaatggcaacaattcggaaaaggaatgagacatccgta
atcgaccaaataggagacgacttgctgtcctggttcagcgggggcgaggaggagaagatc
aagcaggcggtgggcacgttctgcagcaaccagccctttgctctggagctcatcaagagc
aggcagaagaaggactcgcgcttcacctccttcatgcaggaggctgagagtaaccgactg
tgtcgaagactccaactgaaggacatcattcctgtggagatgcagaggctcaccaagtac
cctctcctactggagaacatcgccaagtacacagatgacaccgtggagaaagaaaaggta
aagaaggcgggtgactgctgcaggaagattctcaaccacgtcaaccaagctgtgaaggag
tctgaaaacaaacagaggctggaggactaccagaggaggctagacctctcgtctctgaag
cagacggagaaccccatgatttcagagctcaagaacctggacctgaccaagaagaagatg
gtccacgagggaccactgtcatggaaggtcaacaaggacaagactattgagctgtacacc
ttgctcctggaggacatcttggtactgctgcagaagcaagacgagcgcctcatcctcaag
tgccacagcaaaaacctgtcgggcaccgctgacacaaagcacatcttcagccccatcatc
aagctcaacgcggtgctggtgcgctctgtggccacagacaacaagtcgttctttgttctc
tcaatgtcggacaacggggcccagatctacgagctgatggcccagaccgtatcagagcag
agaatgtggcagcggcagatcacccagagagcggacgccatgaaagtgaagccgcacagc
atcatccacttacctcaaacggatggagagagagacggtgttgagatcatcactgcaggc
gtagcccgactcagtaaggacccggaccgcatctcctctggaagcagccagtctatagat
aaagagtgcagcgctgccccttgtggcgtgatgcagacccctctcccagatgccaacctc
tttgtaggactcaaggccgaggaggagcccagtcgggaagaggggctttatggggacccg
gatcgtgcaaatagtctccccttccgcatggccgtagacgggctcagcgaatcggaaggg
ctgggcttcagtacttctagagctgacgatgccttaaagacattgtcggcgctgaagcag
gtcctggtgacccagctgatgtcgcaggaggagtgtgagcgtgctgggcgcacctcctcg
gggggcggccgtcttctcaggaccacgtccctgaggacccccgtggacagccgtgcccgg
gtggcggtgcagaacggctcagggaggtgcacccaggccagccaccccgaggacccggct
caggacctggtgtctggggacacgggcttctttgagtcccctgaggattatgcagggtac
ctggtcctggagggctacgggggcttgggggagagcagcacggacgacgacctccagtcc
acggggaagcagctgagcgcctcacggggctgcggggcaggagactctgggatcagcctg
aggttttcctccgcctcacaggcaggtagcatctgcagcttcagccgacaggtcctgtcc
cacctccgcaacctgcagaccaacctcaaccacctcaaggaggtagaggccaagtatcac
agtctactacgcctaaggccggccaggtcatcgacagacgtggaagataacaaagataag
agatag
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integrated database retrieval system
