Coregonus clupeaformis (lake whitefish): 121561306
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Entry
121561306 CDS
T08357
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121561306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121561306
03036 Chromosome and associated proteins [BR:
cclu03036
]
121561306
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121561306
Coactivators
SAGA/TFTC/STAGA complex
121561306
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
121561306
STAGA complex
121561306
TFTC complex
121561306
SAGA complex
121561306
SLIK complex
121561306
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
TFIID_NTD2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_HPS5
RMC1_N
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_WDR19_1st
WD40_like
PEP5_VPS11_N
Beta-prop_WDR75_2nd
PROPPIN
WD_LRWD1
Beta-prop_ELP1_1st
Nbas_N
Motif
Other DBs
NCBI-GeneID:
121561306
NCBI-ProteinID:
XP_045073848
LinkDB
All DBs
Position
Unknown
AA seq
609 aa
AA seq
DB search
MKRVRTEQIQYTVSQYLKRRQYVDTESSLKGAKLSQSAEEMAANLTVQTESGCANIVSAA
PCQADPQQYETQFSRLRNFLSEAALPWGQEVSCVLYPLFVYLHLDMVRCSLKGAVDGFYS
RFHSLFLGDAEQRSTVEQLRHVLTQQDVTANPKLLAFLDHKYVVHLTEPAYSYLLRYLQS
EDNSTLCRALSTHVQVEVTSSPRTDYQLYGTTGAGAAGAGAAATAPNSTSSWSGAEGPEG
GEAAVVEVPTGIPQSEAALESLQDCIKKVREGPPSLTTVCFYAFQHTEQLLNAAEVSADS
KLLAAGFDSSAVKLWSLRARKLKARPHRADVSHIRLACDVLEEEADEEDGSGSEIKTLRG
HSGPVFRTAFLTDSSGLLSCSEDTSIRYWDLGSFTNTALYQGHAYPVWDVDVSPCSLYFA
SGSHDRTARLWTFSRTYPLRLYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGAS
VRLFTGHRGPVLSVAFAPNGKYLASAGEDQRVKLWDLASGALVKDLRGHTDSVTSLSFSP
DSSLVASSSMDNSVRVWDIRNSHGATHADGSSSELVGLYTGNTSKVLNVQFMACNLLLVT
GTAQEKHGQ
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgggtacgcacggagcagatccagtacacggtatctcagtacctgaagcgaagg
cagtatgtggacactgaaagttccctgaagggggctaaactgtcccagtccgcagaggag
atggctgccaacctcacagtgcagacagagtcggggtgtgcaaacattgtctctgctgcc
ccttgtcaagctgaccctcaacagtacgagacacaattttccagactacgcaattttctc
tcagaagcggcgttgccatggggccaggaggtgagctgcgtcctgtacccgctctttgtt
tacctccacctggacatggtgcgctgcagcctgaagggggcagtggacggcttctacagc
cgcttccacagcctcttcctgggggacgccgagcagcgctccaccgtggagcagcttcgc
cacgtcctcacccagcaggatgtcaccgccaaccccaagctcctggccttcctcgaccac
aagtacgtggtgcacctgacggagccggcctacagttacttgttacgatacctgcagagc
gaagacaacagtaccctctgcagggccctcagcacccacgtccaggtagaggtcacctcc
tcgccacgcaccgactaccagctctacgggacgacgggtgctggagccgctggggccggg
gccgcagccacggcccccaactctacctcctcgtggtcaggcgcggaaggccctgaggga
ggggaggcggctgtggtggaggtccccacggggatcccgcagagcgaggcggccctggag
tcgctgcaggactgcattaagaaggtgcgcgaggggccaccgtcactcaccaccgtgtgc
ttctacgccttccagcacacggagcagctgctgaacgcggcggaggtgtcggccgacagc
aagctgctggccgccgggttcgacagctcggctgtcaagctgtggagccttagggccagg
aaactgaaggccaggccacaccgggccgacgtgtcgcacatccgcctggcctgtgatgtg
ctggaagaggaggcagatgaagaggacggctcgggcagcgagatcaagaccctgcgcggc
cacagcggcccggtgttccgcacggcgttcctgacagacagctcgggcctgctgtcctgc
tcggaggacacgtccattcgctactgggacctgggcagcttcaccaacacggccctctac
cagggccacgcctaccccgtctgggacgtggacgtcagcccctgcagcctctacttcgcc
agtggctcgcacgaccgcaccgcccgcctctggaccttctccaggacctaccccctgagg
ctctacgccggccacctagcggatgtggactgcgtcaagttccaccccaactcaaactac
ctggccacaggctccacggataaaaccgtccgcctctggagtacccagcagggggcttca
gtgcgcctgttcacaggccaccgcggccccgtgttatccgtagccttcgcgcccaatggg
aagtacctggcgtctgcgggcgaggaccagcgggtgaagctgtgggacctggcctcaggt
gctctggtcaaggacctgaggggccacacggacagtgtcaccagcctgtcgttcagcccc
gacagcagcctggtggcctcctcctccatggacaattcagtcagggtgtgggacatccga
aactcccatggggcgacccacgcggatggctcatccagcgagctggtggggctctacacg
ggcaacaccagcaaagttctcaacgtccagttcatggcctgtaacttgctcctggtgacg
ggaacagcgcaggagaaacatggacagtag
DBGET
integrated database retrieval system
