Coregonus clupeaformis (lake whitefish): 121561315
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Entry
121561315 CDS
T08357
Symbol
taf15
Name
(RefSeq) TATA-binding protein-associated factor 2N isoform X1
KO
K13098
RNA-binding protein FUS
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03015
mRNA surveillance pathway
cclu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121561315 (taf15)
09122 Translation
03015 mRNA surveillance pathway
121561315 (taf15)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121561315 (taf15)
Spliceosome [BR:
cclu03041
]
Complex A
Other components
Complex A specific factors
121561315 (taf15)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Zn_ribbon_RanBP
Motif
Other DBs
NCBI-GeneID:
121561315
NCBI-ProteinID:
XP_041729846
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All DBs
Position
5:7563388..7586884
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AA seq
439 aa
AA seq
DB search
MASDSGYGQPGAPSYGAYPPAQQGGQGYGQGNGSGSYGGQSYAGYGQSAEGYGQTTQAAS
YGQPAYDGYGQQGSDSAAGYGGADKSSYSQPSSYGGAADGGSYGQSQGGYRGRSEGEGGQ
GRRYGGDDGGSDRGSSDGYRGRGRGGYERGGYDRGGRGGPPSGMGGGDRGGYKNYGGPRD
YGSRDEPTGGSGGSQGSGSGGEQDNSDNNTIFVQGLGEDVTSDEVGNYFKQIGIIKLNKK
TGLPMINLYSDKATGRLKGEATVSFDDPPSAKAAIEWFDGKEFQGKPLKVSFATRRAEFT
QRGGGVGGGGGGGRGGGGFGGRGRGRGFGGGGGGGGGGGGGGPNFDIKGGDWPCPNSSCG
NMNFARRYECNKCGTPKPGDGGGDRGGGGGGRGGYGGDRGGGYRGRGGFRGGDRGGYGGG
GYKMGGRGDHREDRRDRPY
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggcctctgattcgggctacggtcagcctggcgctccaagctatggagcttatcctcct
gctcagcagggtgggcagggctatggtcaaggaaatggaagtggctcatatggtggacag
agttatgctggttatggacagtctgcagagggttatggccaaacaacacaggcggcaagc
tatggccagccggcctatgatggctatgggcaacaaggctcggattccgctgctgggtat
ggtggcgctgacaagtcgtcatacagtcagccgagttcctatggcggcgccgccgatggc
ggctcttatggacaatctcaaggaggctacagaggtcgaagtgaaggtgaaggcgggcag
ggcaggaggtatggtggagatgatgggggctcagacaggggctcttctgacgggtataga
ggccgagggcgtggtgggtacgagcgcgggggatacgacaggggtggaagaggcggccct
ccatccggtatgggaggtggtgaccgtggtggctacaaaaattacggtggtcctcgagac
tacggctcaagggatgaaccaactggaggtagcggcggtagccaaggtagcggcagcggc
ggggagcaggacaactctgacaacaacaccatctttgtccagggactgggagaagatgtc
acaagtgatgaagtgggcaactacttcaaacagattgggatcattaagttgaacaagaag
actggcctgcccatgatcaacctgtactctgacaaggctactggaagactgaagggagag
gccacggtctcatttgatgatccaccttctgccaaagcagccattgagtggtttgatggc
aaagaattccaagggaaacccctcaaagtgtcttttgccacccgaagagctgagttcacg
cagaggggtggtggtgtaggagggggaggaggaggaggaagaggaggaggaggttttggg
ggccgtggtcgtggacgtgggtttggaggtggaggaggaggaggaggtggtggtggtggt
ggtggacccaactttgacatcaagggaggggactggccatgtcctaacagttcttgtggc
aacatgaactttgcgcgacgatacgaatgcaacaagtgtggcactccaaaaccaggggac
ggtggaggagatcgtggtggtggtggtggcggcagaggagggtatggtggtgacaggggt
ggcggctacagaggccgtgggggattccgtggaggtgaccgcggtggatatggtggtggg
ggatacaagatgggaggaagaggtgaccatagagaagacagaagagaccggccatactaa
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