Coregonus clupeaformis (lake whitefish): 121561492
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Entry
121561492 CDS
T08357
Name
(RefSeq) cystic fibrosis transmembrane conductance regulator-like
KO
K05031
cystic fibrosis transmembrane conductance regulator [EC:
5.6.1.6
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu02010
ABC transporters
cclu04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
121561492
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
121561492
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cclu02000
]
121561492
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.6 channel-conductance-controlling ATPase
121561492
Transporters [BR:
cclu02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC7 subgroup
121561492
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CFTR_R
ABC_membrane
ABC_tran
AAA_21
DUF87
SMC_N
AAA_29
AAA_16
RsgA_GTPase
T2SSE
FtsK_SpoIIIE
nSTAND3
MMR_HSR1
nSTAND1
AAA_23
Dynamin_N
NB-ARC
ATP-synt_ab
MeaB
DO-GTPase2
AAA_30
Zeta_toxin
Motif
Other DBs
NCBI-GeneID:
121561492
NCBI-ProteinID:
XP_045074098
LinkDB
All DBs
Position
Unknown
AA seq
1454 aa
AA seq
DB search
MQKSPVEDANFLSKYFFWWTSPLLRKGFRNKLELTDIYKAPSFDLADNLSERLEREWDRE
VASAKKKPRLLRALSRCFLWPFVFYGILLYFGEASKTVQPQLLGRIIGSFDPIHAPEREQ
GYYLALGLCLLFTARFLLLQPAIFGLHHLGMQIRIALFSLIYKKTLKLSSRVLDKISTGQ
LVSLMSAHLNKLDESLGLAHFVWITPLQCILCVGLIWELIEVNGFCALAALTLLGIIQAC
LSQKMGPHRQKRAGMISRRLALTSEIVENIHLVKAYGWEEVMEDIIKNIRQDEMTLTRKI
GSLRYFYSASYFFSAILVIVSAIVPHALSKGIILRSIFTTASYCMVLRMTLTRQLPGSIQ
MWYDTLALVTKIEEYLCKEEYKVLEYNLTTTEVELVNVTASWDEGIGELFEKIKQENKSN
GHPNGDVGLFFTNLYVTPVLKNISLYLEKGQMLAVAGSTGSGKSSLLMMILGELVPSEGK
IRHSGRISFSPQTSWIMPGTIRDNILFGLTYDEFRYTSVIKACQLEEDLALLPEKDKTPL
MEGGVTLSGGQRARIGLARAVYKDADLYLLDSPFTHLDIVTEKAIFERCLCKLMSSKTRI
VVTSKLDHLKRADKILLLHNGVCYFYGSFSQLQAQRPDFSSLLLGLEAYDNINAERRSSI
LTETLRRVSIDESAVLRGPEPIRQSFRQPPPSVINGNTGPQGITIAGGDGLTDAEKRKQS
IILNPLAAARKFSFIGTGPQNSQAPPPGSTTIEDGVRELSERKFSVVPEDDQVEESLPRG
NLYHDGLQHPSGQRRQSVLQFITNAKGQGRREQLQTSFRKKLSITPQCELASELDIYARR
LSKDSVYDISEDVDEEDMEQCFADERENVFETTSWNTYLRYIFTNRNLVYVLIFIFLVFA
LEVAGSVLGIFLITDKIWTEEANPLAPNYVDQQHSNTSSPAVQQSVIVTPTSTYYIIYIY
VATSESVLALGFFRGLPLVHTLLTVSKRLHEQMLTAVLRPPMAVLNTMKTGRIMNKFTKD
MATVDDMLPLVLFDLIQLTLIVLGAISTVSIMRPYIFIAAIPLAVIFMVLRKYFLRTGQQ
LKQLEAEARSPIFSHLIISLKGLWTIRAFGRQCYFETLFHKALNTHTAIWFHYLSTLRWF
LFRCDIIFVFFFSAAAFIAVGTNQDKPGEIGIIVALAMLILGTFQWAVITSITVDGLMRS
VDRVFKFIDLPQEEPRPSGGGKGKDLVLDNPHTQDCWPNRGHMDVQGLTVKYTEAGRSVL
QNLSFTVEAGQSVGVLGRTGSGKSTLLSALLRLASTDGEISIDGVSWDSVTLQTWRKAFG
VVPQKIFILTGTFRMNLDPHARHSDEELWRVAEEVGLKSVIEQFPDKLDFQLEDGGYVLS
NGHKQLMCLARSILSKARILLLDEPSAYLDPITLQVLRKTLKQSFSNCTVILSEHRLLEC
QSFLGYNLGPQSVI
NT seq
4365 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagtcacccgtggaagatgcaaacttcctctccaaatatttcttctggtggaca
tctccactgttgaggaagggcttcagaaataagttggagttgacagatatttataaagca
ccatcttttgatctcgcagacaatctttctgaacgactagaaagagaatgggaccgagaa
gtggcatcggccaagaagaagcctcggctcttgcgggcactctcccgttgtttcctctgg
ccttttgtgttctacggaatcctgctgtactttggggaggcgtcgaagacagtgcagccc
cagctcctgggtcgtatcatcggctcgttcgaccccatccatgcccctgagcgggagcag
ggttactacctcgccctgggtctctgtcttctcttcaccgctcgcttcctgctcctgcag
ccagccatctttggactgcaccacctgggcatgcagatacgcatcgctctcttcagcctc
atctataagaagactctgaagctgtccagccgggtcctggacaagatcagcacaggtcag
ctggtcagcctgatgtcagcccacctcaacaagctggatgagagtcttggcctggcccac
tttgtgtggatcacccctctgcagtgtatcctgtgtgtggggttgatctgggagctgatc
gaggtgaatggtttctgtgccctggctgccctcaccctgctgggcatcatacaggcctgc
ctctcccagaagatggggcctcacaggcagaaaagagcagggatgatcagcaggcgtctg
gctctgacctcagagattgtagagaacatccacttagtgaaggcctatggctgggaggag
gtgatggaggacatcatcaagaacatcagacaggatgagatgacgttgacgaggaagatt
ggttctctgcgttacttctacagtgcctcctacttcttctctgccatcctggtcattgtg
tcagccatcgtgccccatgccctcagcaagggcatcatcctgagaagtatctttaccacc
gcctcctactgcatggtgctccgtatgaccctcaccagacagctgcctggctctatacag
atgtggtacgacaccctggcgctggtcacaaagatagaggaatacctctgtaaagaggag
tacaaagtattggagtacaacctgaccaccactgaggtagagctggtcaacgtgactgcc
tcctgggatgagggtatcggagagttgtttgagaagataaagcaggagaacaagtctaac
ggccatcctaacggtgacgtagggctgttcttcaccaacctatatgttacacccgtcctc
aagaacatcagcctgtacctggagaagggacagatgctggcggtggctggatccaccggc
tcaggaaagagttccctgctgatgatgatcctgggagagctggtcccgtctgaggggaag
atcagacacagcggacggatctccttctccccccagacctcctggatcatgcccggaacc
atccgtgacaacatcctgtttggtctgacctacgacgagttccgctacacctctgtcatc
aaggcctgtcagctggaggaggatctggccctgctgccggagaaagacaagacgcccctt
atggagggaggggtgacccttagtggaggtcagagggcgaggataggtctggccagagct
gtgtacaaagacgctgacctctacctgttggattcgcctttcacccacctggacattgtg
acggagaaagcgatctttgagaggtgtctgtgtaaactgatgtcctccaagactcgtatt
gtggtcaccagtaagctggaccaccttaagagagcggacaagatccttctgcttcacaac
ggagtgtgttatttctacggctccttctcccagctgcaggcccagagaccagacttcagc
tccctgctcctgggcctggaggcctacgataacatcaacgccgaacgccgcagctccatc
ctcaccgagacactccgacgcgtctccatcgacgaatccgctgtcctccgtggccccgag
cccatccgccagtccttccgccagcccccgccatcagtcatcaacggcaacacaggacct
caaggcatcaccatcgccgggggcgacggtctcacagatgcggagaaacgtaaacagtcg
attatcttaaatccattagcagcggcacgtaagttctccttcattggtactgggccccaa
aacagccaggctccgcccccagggtccaccaccatcgaggacggcgtgcgggagctgtca
gagaggaagttctctgtggtccccgaggacgatcaggtggaagagtcgctgccccggggg
aatctgtaccacgacggcctgcagcacccgagcgggcagcggcgccagtctgtgctgcag
ttcatcaccaacgccaaggggcagggcaggagggagcagctccagacgtccttcaggaag
aagctgtccatcacgccgcagtgcgagctggcctctgagctggacatctacgcacgacgc
ctgtccaaagatagtgtctatgacatcagcgaggatgtggatgaggaggacatggagcaa
tgctttgcagacgagcgtgagaacgtgtttgagacgacatcgtggaacacctacctgcgt
tacatcttcaccaacaggaacctggtctacgtcctcatcttcatcttcctcgtcttcgct
ctcgaggttgccggctctgtcctggggatatttcttatcacagataagatctggacagag
gaggccaacccgttggcgcctaactacgtagaccaacaacactccaacacctcgtcaccc
gccgtccaacagtcagtcatcgtcacgccaaccagcacctattacatcatctacatctac
gtggcgacgtcggagagcgttctggcactggggttcttcagaggcctgccactggtccac
accttactgaccgtgtccaagaggctgcatgaacagatgctcactgctgtgctgaggccc
cccatggccgtactcaacactatgaagacaggtcggatcatgaacaagttcactaaagac
atggccaccgtcgacgacatgcttcctcttgtattgtttgacctcatccagttaactctg
atcgtgctgggagccatctctactgtgtccatcatgcggccatacatcttcatcgccgcg
atcccattggccgtcatattcatggtcctgaggaagtacttcctgcgtacaggacagcag
ctcaaacaactggaggctgaggcccgtagccctatcttctctcacctcatcatctctcta
aagggtctgtggaccatccgtgcatttggacgtcagtgctactttgaaacattgttccac
aaggccctgaacacccacacggccatatggttccactacctctccacgctgcgatggttc
ctcttccgctgtgacatcatcttcgtcttcttcttcagcgccgcagccttcatcgccgtg
ggaaccaaccaggataagccaggggagattggcatcatcgtggccttagccatgcttatc
cttggtaccttccaatgggctgtcatcaccagcatcactgtggacggactgatgcgatca
gtagatcgggtcttcaagttcatcgacttgccgcaggaggagcctagacccagtggtggt
ggtaaaggcaaagacctggtcctggacaacccccacactcaagactgctggcccaaccgg
ggccacatggatgtccagggactgactgtcaagtacacagaggccggacgctctgtgctg
cagaacctgtccttcaccgtggaagcgggccaaagtgtgggtgtgttggggaggacaggc
tcagggaagagcaccctgctttctgccctgctgcgcctggcctctacagatggagagatc
tccattgatggggtctcctgggactctgtcacactacagacctggagaaaagcctttggt
gtggtgccacagaaaatcttcatactgactggaacgtttcgtatgaacctggatccgcac
gctcgccacagtgacgaggaactgtggcgggtggctgaggaggtgggtctgaagtcagtg
atagagcagttcccagacaagctggacttccagctggaggacgggggttacgtcctgagt
aacggacacaagcagctcatgtgtttggcccgctctatactcagcaaggcccgcatactg
ctgctggacgaacccagcgcctacctcgaccccataacgttgcaggtcctgaggaagacg
ctgaaacagtctttctccaactgtacagtcatactgtcagaacacagactgctggagtgc
cagtccttcctgggctacaatttgggaccacaatcagtcatttaa
DBGET
integrated database retrieval system
