| Entry |
|
|---|
| Symbol |
npas1
|
|---|
| Name |
(RefSeq) neuronal PAS domain-containing protein 1 isoform X1
|
|---|
| KO |
| K09098 | neuronal PAS domain-containing protein 1/3 |
|
|---|
| Organism |
cclu Coregonus clupeaformis (lake whitefish)
|
|---|
| Brite |
KEGG Orthology (KO) [BR:cclu00001]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:cclu03000]
121562078 (npas1)
Transcription factors [BR:cclu03000]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
121562078 (npas1)
|
|---|
| SSDB |
|
|---|
| Motif |
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|---|
| Other DBs |
|
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| LinkDB |
|
|---|
| Position |
5:11668139..11707344
|
|---|
| AA seq |
780 aa
MATMPFVSEGKCVSVEWDFLQGLLAKPPTLPCLQNLRKEKSRNAARSRRGKENFEFFELA
KMLPLPGAITSQLDKASVIRLTISYLHMRTFASQGDPPWCPLLEGENHCSKVRRSSHSLA
TDMFEQHLGAHLLQSLDGFVFVVSSEGRFLYISETVSIYLGLSQVELMGSSVFDYIHPAD
HVEMAERLGIRPHLRAEAGCHVAPESASSSASTSSLAGTPEPAPSSPLSPGNEPPDRGFF
IRMKSTLTKRGLHVKSSGYKVRVIHVTGRIRCRPAIMPGSARSVRRPMGLVALAHTLPPS
TLNEVRMESQMFVFRVNMDLQVTYCENRISEYMDLSPAEVVGHTCYHFIHVEDLDNIRQS
HEDLLRKGQVVTGYYRWLQRRGGYLWVQSCATVSINHKAPHERNVIWVNYVTSRTELPDT
PLDLLQLPESLRAERLKASYSPSEHSPQARGPQPMKSSMCKGDPDSKLREIYNPGIQSGD
RRKRPLRSDSEGAPPETRRRLEEFRQREGSVSASSDLGSESEGEEREWEQGGDSGRVKRE
GPSKRGVETPMGFERGGRVHNSRAVIQHLKSVVSSPLSGPPNIKTEHEALATGGRWTHTS
SHTQPPPSHTHTPCGSLNGDSPPTPIPDSSSSSEAPPKGIFTPPSPAMSPPMSGSSPLPC
EERGMLSGGRGGGPDFELLQRLAAGGAAGRVLFHPLALGPQGPQSLYAPSTIRYAPPELP
HSHPGAEGLRSDHHKGPPAFFPHLQRLAGLPSFSGFSASDNPFNPFCMNGLRGAAGSEED |
|---|
| NT seq |
2343 nt +upstreamnt +downstreamnt
atggcgaccatgccgttcgtcagcgagggaaagtgtgtgagcgtggagtgggacttccta
cagggactactggccaaaccccccaccctgccctgtttgcagaacctgcggaaggagaag
tctcgtaatgcagcacgttcccgtcgcggtaaggagaactttgagttctttgagctggcc
aagatgctccctctccctggagccatcaccagccagctggacaaggcctcggtcatccgc
ctcaccatcagctacctgcacatgcgcaccttcgccagccagggagacccgccctggtgc
cccctgctggagggcgagaaccactgcagcaaagtgcgacgctcctctcactctctggcc
actgacatgttcgaacagcacctgggagcacacctgctacagtctctggacggctttgtg
tttgtggtaagctcagagggacgattcctctacatatcagagactgtttccatctacctg
ggcctctcacaggtggagttgatgggcagcagtgtgtttgactacattcacccagcggac
cacgtggagatggcagagcgtctgggcatcagaccccacctgagggccgaggctggctgc
cacgtggctcccgagagcgcttccagctctgcctccacatcctccctggcagggaccccc
gagcctgccccctcaagccctctctctcctgggaacgaacctcctgaccgaggtttcttc
attcgtatgaagtccaccctcaccaagagaggcctccacgtcaagtcctcgggctacaag
gtcagagtgatccatgtgaccgggcgaatccgctgtcgccctgccataatgccaggctcc
gcccgctcggtgcgtcggccaatgggcttggtggcccttgcgcacactctccctccctcc
acgctgaacgaggtgcgcatggaaagccagatgtttgtcttccgggtcaacatggacctg
caggtcacctactgtgagaacaggatctcagagtacatggacctgagcccagcagaggtg
gtgggacacacctgctaccacttcatccacgtagaagaccttgataacatcagacagagc
catgaggacttgttgaggaagggtcaggtggtgacagggtactaccgttggctccagagg
agagggggttatctgtgggtccagtcctgtgccaccgtctccatcaaccacaaagccccc
cacgaacgcaacgtcatctgggtcaactacgtcaccagtcggacagagctcccagacact
cccctggatctgctgcagctcccagagagcctgagggcggagcgtctgaaagccagctac
tccccttcggaacactcgccacaagcccggggtccacagccaatgaaaagctctatgtgt
aaaggtgaccctgactctaaactgagagagatctataatcccggcatccaatctggggac
aggaggaagcgtccgctgcggtctgactctgaaggtgctcccccggaaacgcggcgtcgc
ctggaagagtttcgccagagagaggggagtgtgtcagcctcctctgacctgggcagtgag
agtgagggagaggaaagagagtgggagcaggggggagacagcgggagggtcaaacgagag
gggccttcgaaacgaggcgtggagacccccatggggttcgagaggggtggcagggtgcac
aacagccgtgcggtaatccagcacctgaagagtgtagtgtcctcgcctctctctggcccc
cccaacatcaagactgaacatgaggcactggccacagggggccgctggacacacacctcc
tcacacacacaacccccaccctcacacacacacaccccctgtggcagcctgaacggcgac
agtccccccacccctatcccagactcctcctccagcagtgaagccccacccaaaggtatt
ttcaccccgccctcccccgccatgtcccctcccatgtccggctcctcccctctaccctgt
gaagagcggggcatgttgtctggaggccgggggggcgggcctgactttgagctattgcag
agactggcagcggggggtgctgcaggacgggtgctgttccaccccctggccctcggcccc
caggggccacagagcctgtacgcccccagtaccatccgctatgcgcccccagagcttccc
cactcccaccccggtgctgaggggctgcgctccgaccaccacaagggccccccagccttc
ttcccccacctccagaggctggccggcctgccctccttcagtgggttctccgcctcagac
aatcccttcaaccccttctgtatgaacggactgaggggggccgcagggtccgaggaggac
tga |
|---|
