Coregonus clupeaformis (lake whitefish): 121562085 Help Entry 121562085         CDS       T08357                                  Symbol htt Name (RefSeq) huntingtin isoform X1   KO K04533   huntingtin Organism cclu  Coregonus clupeaformis (lake whitefish) Brite KEGG Orthology (KO) [BR:cclu00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:cclu03019]     121562085 (htt)    04131 Membrane trafficking [BR:cclu04131]     121562085 (htt)    03029 Mitochondrial biogenesis [BR:cclu03029]     121562085 (htt) Messenger RNA biogenesis [BR:cclu03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     Common to processing body (P body) and stress granule      121562085 (htt) Membrane trafficking [BR:cclu04131]  Endocytosis   Rab GTPases and associated proteins    Rab associated proteins     121562085 (htt) Mitochondrial biogenesis [BR:cclu03029]  Mitochondrial quality control factors   Regulator of mitochondrial biogenesis    Other regulator of mitochondrial biogenesis     121562085 (htt) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Htt_C-HEAT Htt_N-HEAT Htt_bridge Htt_N-HEAT_1 HEAT HEAT_EF3_N HEAT_ECM29 GNC1_N Motif Other DBs NCBI-GeneID:  121562085 NCBI-ProteinID:  XP_045070249 LinkDB All DBs Position Unknown AA seq 3189 aa AA seqDB search MATMDKLMKAFESLKSFQQQQGPPTAEEMVQKQKKELATTKKDRVAHCLTICENIVAQSL RTSPEFQKLLGIAMEMFLLCSDDRESDVRMVADECLNKIIKALMDSNLPRLQLELYKEIK KNGASRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRITKRQEESVQETLAAAIPKI MSALGHFANDGEIKVLLKSFVANLKSTSPTIRRTAASSAASMCQHSRRASYFYTWLLNIL LGLLVPVDEDHPSHLVLGVLLTLRYLMPQLQQQDRTTSLKGSFGVTRKESDVQPTPEQLL QAYELTLHYTQHGDHNVVTAALELLQQMFRTPPPELLHMLITRGSVLRAGVFRQDIESRA RSGSVLEFIAGGGSSCNSPLLLRKQKGKMLSGEEEGLEDDPERAEVTTGAFTGTAQVVDI ITEQPRSSQHALQPGESVDISGASSEQGTTALGTSGTVSGSEGGAGTPESPNDNGADEDM LSHSSSGANVTPETADYATPENAEMPDGPLLDPLGDPSLPPSADSSQTTTEGPDSAVTPS DVAELVLDSSESLYSGMQIGTLQDEEEEGAVPSSLGQAHPEPFSQSALALSRPHLLEGRG HNRQASDSSVDHFIPKEEPVETTELENKPSRIKGPIGHYTDQGAEPLVHCVRLLSASFLL TGQKNGLVPDKEVRVSVKVLAVSCIGAAAALHPEAFFNSLFLEPLDGVTQEEQQYISDVL CLISHGDPQIRGATGVLCGAIIHSALIKTRYNIHTWMSTIHNSTGNPVSLVDLVPVLQNT LKDESSVTCKMACSAVRHCIMTLCSSTLSELGLQLLVDLLTLKDCSYWLVRTELLDTLAE VDFRLVNFLEKRTESLHKGEHHYTGLLRLQERVLNDVVIHLLGDDDPRVRHIAAATVSRL VSRLFYECDQGQADPVVAIARDQSSVYLQLLMHETLPPSHFTVSTITRTYRGYNLSQGVS DVTVENNLSRVVSAVSHALTSSTSRALTFGCCEALHLLTTTFPACTWSTGWHCGYVSSTV THPNRSNLNRSRARSHSLSQPGSGPLEEGKRTLTVGMANMVLSLLSSAWFPLDLSAHQDA LLLAGNLLAAAAPKCMRSPWAGGEEEGGPAPSKAEEPWAAVGERPLVVLVEQLFSHILKI LNICAHVLDDALPGPALKATLPSLANAPSLSPIRRKGKEKEVAEPSTAPMSPKKGSETNT GRPADSTGSTTNINKSTTLGSFYHLPTYLKLYDVLKATHTNYKVTLDLHSTNEKFGGFLR SALDVLSQLLEMATLHDIGKCVEEILSYLKACFSREPLMATVCVQQLLKTLFGTNLASQY EGAQGGPSRSQGKALRLGSSSLRPGLYHYCFMAPYTHFTQALADASLRNMVQAEQEQDAS GWFDVMQKVSNQLRSSITNVTKQRGDKNAIHNHIRLFEPLVIKALKQYTTSTSVALQRQV LDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRDSEAIVPNIFFFLVLLSYER YHSKQIISIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGSNKADAGKELDTQK EVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIADIILPMIGKQQMHLDSP EALGVLNTLFETVAPSSLRPVDMLLKGMFTTPATMANVNTVQLWVSGVLAVLRVLISQST EDIVLSRVHELSLSPLLLSCPTIRHLHDDSSLSSPPQPPPATPATVATDNQEANGERVLP EETFARFLLQLVGVLLDDISTRQVKVDMTEQQHTFYCQQLGTLLMCLIHIFKSGMFRRIT AAATRLLKVESGLGGGPGASGVFYPLEGLNAMVGCLVTTHPSLVLLWCQVLLIINYTNYS WWTEVHQTPRRQSLSCTKLLSPHSPGELEEERPEARLAMCNREIVRRGALILFCDYVCQN LHDSEHLTWLIVNHVRDLINLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCDNVSTPTM LKKTLQCLEGIHLSQSGSLLMLYVDKLLNTPFRVLARMVDTLACRRVEMLLAETLQNSIA QLPLEELDRIQEYLQISGLAQRHQRFYSLLDRFRATVAEDTSSPSPPVTSHPLDGEPPPA PELVEADKEWYVALVRSQCCLRGDGSFLETTELLTKLPPDDLSTIMTCKDFNLSLLCPCL SLGVQRLTRGQGSLLLETALAVTLDQLGEVTQLLPVPHHSFLPPAKPDPAEPYWDKLAII YGEAGLYPRVMSLCRALSQYLLCVGQLPSSLQIPEDKQHLITIFIAMATELVVWRVLKDS VPLSVDLQWALSCLCLALQQPCVWNRLSTARYKTHTCSVIHCLRLLITAVAVGPGDQLLH PERKRTTGSDCDSDQVHSPNTDNVCERRSCEIMAELVEGLQSVLSLGHRRNSGIPAFLTP TLRNIIISLSRLPLVNSYTRVPPLVWKLGWAPRPGGEFGTTLPEIPVEFLQEKDVFREFL YRINTLGWSSRTQFEETWATLLGVLVTQPISMDQEEEREQEEDLERTQCNVLAVQAITSL VLSAMTLPTAGNPAVSCLEQQPRNKTLKVLDTRFGRKLSVIRGVVEREIQAMVSKRDNVH TPHPYHTWDPVPSLSAVSPAGTLISHEKLLLQINTEREMGNMDYKLGQVSIHSVWLGNNI TPLREEEWGEDEEDETDTPAPASTPTSPINSRKHRAGVDIHSCSQFLLELYSQWLLPGSP SNRRTPVVLISEVVRSLLAVSDLFTERNQFEMMFTTLMELQKSHPPEDEIVNQYLVPAVC KAAAVLGMDKATSEPVCRVLEVTLRSTHLPSRMGALHGLLYVLECDLLDDTAKQLIPTVS DYILSNLRAIAHCVNLHNQQHVLVMCAVAFYMMENYPLDVGAEFTAGVIQMCGVMVSASE DSTPSVIYHCVLRGLERLLLSEQLSRMDGEALVKLSVDRVNMPSPHRAMAALGLMLTCMY TAVRTSACTAESALRSEVKGQGSEVTSGPVAFSSGKEKASPGRPTDAVDPQAPDSESVIV AMERVSVLFDRIRKGFPSEARVVARILPQFLDDFFPPQDVMNKVIGEFLSNQQPYPQFMA TVVYKVFQTLHATGQSSMVTDWVLLSLSNFTQRTPVAMAMWSLSCFFISASTSQWVSALL PHVISRMGKSDVVDVNLFCLVAMDFYRHQIDEELDRRAFQSVFQTVASPGNPYQKLLDCL QSIHRDTSL NT seq 9570 nt NT seq  +upstreamnt  +downstreamnt atggccaccatggataaattgatgaaggcctttgaatctctcaagtcattccagcaacaa cagggaccaccaacggccgaggagatggttcaaaaacagaagaaagagctggcgaccacc aaaaaggacagagtggcccactgcctgaccatatgtgagaacatcgtagctcagtctctg agaacgtctccggagttccagaagcttctgggcatcgccatggagatgttcttgctgtgc agcgatgaccgagagtcagacgtcaggatggtggcagacgagtgcctgaacaaaatcatc aaagcgttgatggactccaaccttcccagactgcaactggagctctacaaagagattaaa aagaacggtgcctctcggagcctgagggctgctctttggaggttcgctgagctagcacac ctcgtcagaccacagaaatgcagaccctacctggtgaacctcctcccctgtctgaccagg atcactaagagacaggaggagagtgttcaggagaccctggctgctgccatcccgaagatc atgtctgctctggggcacttcgctaacgacggggagatcaaggtgttgttgaagtcgttt gtggccaacctgaagtctacttctcctacgatccggcggacggccgccagctcagcggct agtatgtgtcagcactctagacgggcctcctacttctacacctggctgctcaacatcctg ctgggtctgttggtccctgtagatgaggatcatcctagccacctggtcctgggggtgttg ttaacccttcgctacctgatgcctcaactacagcaacaggacaggaccaccagcctcaaa ggaagcttcggagtcacgaggaaggagtctgacgtacagcccacgcctgaacagctgctg caagcgtatgagttgactctacactacacccagcatggtgatcacaacgtggtgacggcg gctctggagctgctgcagcagatgttccggactccgcccccagagctgctgcacatgctc attacgcgcggcagcgttctgcgcgccggcgtgttccgacaggacatcgagagccgcgcc cgctccggcagcgtcctggagttcattgccgggggcgggtcttcctgtaatagtccactc ctcctcagaaaacaaaaaggcaagatgctgtcgggggaggaggaggggttagaggacgac cctgagagggcagaggtcaccaccggggcctttacaggcacagcccaggtagtcgacatc attaccgagcagccccgttcctcacagcatgctctgcagcccggcgagtccgtggacatc agtggcgcctcctcggaacaaggaacgactgccctcgggacctccggaaccgtctccggc agtgagggaggggcggggactccggagtcgcccaatgacaacggggcggatgaggacatg cttagccacagctccagcggggctaacgttaccccggaaacggccgactacgccacacca gagaatgcggagatgcccgacgggcccctgctggaccccctaggagacccctcactgccc ccgagcgccgactcatcgcagaccaccacagaggggccggactcggccgtcacgccgtca gacgtcgctgaactcgtgttggacagcagtgagagcctgtattcagggatgcagattgga acgttacaggatgaggaagaggagggagccgttccttcctcacttggccaagcacaccct gaacctttctcccagtccgcactggccctgagtagaccccacctcctagagggcagaggt cacaacagacaggcgtcagacagcagtgtggatcacttcataccaaaggaggaaccagtg gagacaacagagctggagaacaagccatcgaggataaagggtccgattggccactacaca gaccaaggggcggagccactggttcactgtgtacgactcctctctgcctccttcctactg actggacagaagaatgggctggtccctgataaagaggtccgtgtcagtgtgaaggtccta gcagtcagctgtatcggagcagcagctgctcttcatcctgaagccttcttcaactctctg ttcctggaacccctggatggagttacacaggaggagcagcagtatattagtgatgtgttg tgtctgatcagccatggagaccctcagatcagaggagctacaggtgtattgtgtggagcg ataatacactctgctctcatcaagacacgttacaacatacatacctggatgtccaccata cacaactctacaggtaacccagtatccctggtggatctagttcctgtactacagaacact ctaaaggatgagtcctctgtcacctgtaagatggcctgctctgcagtcaggcactgcatc atgactctgtgtagcagtactctgagtgagttgggcctgcagctcctggtcgacctgctg accttaaaggactgttcctattggctggtcaggacggaactcctcgacactctggcagag gtggacttccggttggtgaacttcctggagaagagaacagagagtttacacaaaggagag catcactacactgggttgctaaggttacaggagagagtgttgaatgacgttgtgatccat ctgttgggagacgacgatcctcgagtacgacacatagccgctgccactgtcagcagacta gtcagcaggttgttctatgagtgtgaccagggccaggctgatccagtggtggctatagcc agggaccagagctctgtctatctacagctactgatgcacgagacactaccaccttcacac tttactgtctctaccatcaccaggacgtatcgtggttataacctgtctcagggagtatca gacgtcactgtggagaataacttgtcaagagtcgtctctgctgtgtcccacgctctcacc tcctccacgtctagggccctcacttttggctgctgtgaggcactgcatctcctgaccacc accttcccagcatgcacctggagtacgggctggcactgtggctacgtcagctccaccgtc acacaccccaaccgttccaacctcaaccgctcccgggcacgctcacacagcctctcccag cccggctcaggtccgttagaggaagggaagaggactctaacagtagggatggctaacatg gtgttgtctctactgtcctctgcatggttccctctggacctctctgctcaccaggacgct ctgctgctggccgggaacctgctcgctgcggcagccccaaagtgtatgcgtagtccctgg gcggggggggaggaggagggcgggccagcccccagtaaagcggaggagccctgggcagcg gtgggggagcgccccctagtggtccttgtggagcagctcttctctcacatcctcaagata ctcaacatctgtgcccacgtgctggacgatgcgctgccaggacccgccctcaaggccacc ctgccctccctagccaacgctccctctctcagccccatcagaaggaaaggcaaggagaag gaggtagcagagcccagcaccgctcctatgagccctaagaaaggcagtgagactaacact ggcagaccagcggacagcacggggtccaccactaatatcaacaagtccacgaccctggga agcttctatcatctgcctacctacctcaaactgtacgacgtcctcaaagctacacacacc aactataaggtgacgttggacctccacagcaccaatgagaagtttggagggtttctgcgc tctgcactggacgtcctgtctcagctgctagagatggccacgctgcacgacatcgggaag tgtgtggaagagatcctcagctacctgaaggcctgcttctccagagaacctctgatggct actgtctgtgtacaacagttgttgaagacgttgtttggtaccaacctagcctcccagtac gagggggcccagggcgggcctagtcgatcccaggggaaggctcttcgtctgggctcgtcc agcctgagacctggcctctaccattactgcttcatggctccctacacacacttcacccag gccctggccgacgctagcctcaggaacatggtgcaggctgaacaggagcaggacgcgtca gggtggtttgatgtcatgcagaaggtgtccaaccagctgaggtccagtatcaccaacgtg accaaacagagaggagacaagaatgcgatccacaaccacatccgtctgtttgagcctctg gtgatcaaggctctgaagcagtacaccacctccacctctgtggcgctgcagagacaggtc ctggacctgctggcacagctagtacagctacgagtaaactactgtctgctggactcagac caggtgttcataggctttgtattgaagcagtttgagtacattgaggtgggacagttcaga gattcggaggcgatcgtccccaacatattcttcttcctggttctgttgtcgtacgagcgg taccactccaaacagatcatcagcatcccaaagatcattcagctctgtgatggcatcatg gctagtggcaggaaggctgtcacacatgccatcccagccctgcagcctatagtccatgac ctgtttgttctgagaggctccaacaaggctgatgctgggaaggaactggacacccagaaa gaggtggtggtctccatgctgctgagactcatacaataccaccaggtgctggagatgttc atcctggtcctccagcagtgtcacaaggagaacgaggacaagtggaagagactgtccaga cagatagctgacatcatactgcccatgataggaaaacaacagatgcacctggactcccct gaggctctgggagtgttgaacactctgtttgagacggtggccccctcctctctccgccct gtagatatgctgctgaagggaatgttcactacacctgctaccatggctaatgtcaacaca gttcagttgtgggtgtcaggtgtcttggctgtcctcagagtcctcatctctcagtccact gaagacatagtcctctctcgtgtccacgagctttccctctctcctctcctcctctcctgt cccaccatccgacatctccacgacgacagcagcctctcgtcacccccgcaaccgcctccg gcgaccccggcaaccgtcgccaccgacaaccaggaggccaacggagagagggtgctcccg gaggagaccttcgccaggttcctgctccagctagtgggggtgttgttagatgacatctct accagacaggtgaaggttgacatgacagaacagcaacacacattctactgtcaacagctg ggaacgttgttaatgtgtctcatacacatcttcaagagtggcatgttccgtaggatcacg gcagcagccacccgtctcctgaaggtagagtctggtctgggtggaggtccaggggccagt ggtgtcttctatcccctagagggtcttaatgccatggtgggctgcctggtgaccacacac ccctctctggttctgctctggtgccaggtcctcctcatcatcaactacaccaactacagc tggtggacagaggttcaccagacacccaggagacagagtctgtcctgtaccaagctgctg agcccacattccccaggagagctggaggaggagagaccagaggccaggctggccatgtgt aacagagagatcgtacgcaggggagcactcatcctcttctgtgactacgtgtgtcagaac ctgcacgactcggagcacctgacctggctgattgtcaaccacgtccgtgacctcatcaac ctttcccatgagcctccggtgcaggacttcatcagtgccgtgcaccgcaactctgccgcc tccggactgttcatacaggctatacagtcacgctgtgacaacgtctccacgcccaccatg ttgaagaagactctccagtgtctagaagggatccacctgtcccagtctggttctctgttg atgctctacgtagacaaactgctgaatactccgttcagagtcctggctcgtatggtcgac actctggcctgcaggagggtggaaatgctgctggctgaaacactacagaacagtatagcc cagttgccgttagaggaactggacagaatccaggaataccttcagatcagtggactagct caaaggcaccagaggttctactccctgctggacaggttccgagccaccgttgccgaggac accagcagcccctcccctcctgtgacatcacaccccctggatggggaaccgccacctgcc cctgaactagtcgaggctgacaaggagtggtatgttgccctggtgaggtcacagtgttgt ctccgtggtgacgggtcgttcctggagacaacggaactcctgaccaaactacctcctgac gacctctctaccatcatgacctgcaaggacttcaacctgtctctcctctgtccgtgtctg agtctgggggttcagcggttaacccggggtcaggggtcgttgctattggagactgccctg gccgtgaccctggatcagctgggcgaggtcacacagctacttcctgttcctcaccattcc ttcctgccgccggccaaacctgacccggccgagccctactgggacaaactggctatcatc tatggtgaggcagggctctacccgcgggtgatgtctctgtgtagagcgctgtctcagtat ctactgtgtgtgggtcagcttccttcctctctacaaatccctgaagacaaacaacatctc atcaccatcttcatcgccatggctaccgagttggtggtgtggcgtgttctcaaggacagt gttcctctgagtgttgacctgcagtgggctctgtcctgcctgtgtctggccctccaacag ccctgtgtctggaacaggctgtctacagcccggtacaaaacacacacctgctctgtcata cactgtctacggctcctcatcaccgcagtggcggtgggtccaggtgaccagctcttacat ccagagaggaagagaaccacagggtcagactgtgattcagaccaggtccactctccaaac actgacaacgtgtgtgagcggcggtcgtgtgagatcatggccgagctggtggagggtctc cagagcgttctgtctctgggtcaccgtagaaacagcggaatcccagccttcctcacgccc acgctccgcaacatcatcatcagtctgtccagactgccgctggtcaacagctacaccaga gtaccgcccctggtgtggaagctgggctgggcccctcggccagggggagagtttgggacc accctgcctgagatccctgttgagttccttcaggagaaagacgtcttcagagagttcctc tatcgcatcaacacactgggctggagcagtaggacccagtttgaagagacctgggccaca ctactgggagttctggtcacacaacccatctctatggaccaggaggaggagagggaacag gaggaggacttggagcggacccagtgtaatgtgttagcggtgcaggccatcacctctctg gttctgagtgccatgacgctccctacggctgggaaccctgcagtctcctgtctggagcag cagcccaggaacaagactcttaaagtcctggacacacggtttggcaggaagttgtcagtg atccgaggagtggtggagagagagatccaggctatggtgtcgaagagagacaacgtgcac acgccccacccctaccacacctgggaccctgtcccctccctgtctgcagtctcaccagca ggtacactgatcagccatgagaagctcctgctccagatcaacacagagagagagatgggc aacatggactacaaactgggacaggtgtccatccattctgtgtggctggggaacaacatt acccctctgagagaggaagagtggggtgaggatgaggaagatgagactgatactccggcc cccgcctctactcctacctctcctatcaactccaggaagcatcgtgcaggtgtagacatc cactcctgttctcagttcctgttggagctatacagccagtggctcctccccggttcccct agcaacagacgcacccctgttgtgctcatcagcgaggtcgtccgatcgctgttggcggtc tctgacctgttcacagagcgtaaccagtttgagatgatgttcaccactctgatggagctt cagaagagccatcctcctgaagatgagatagtgaaccagtacctggtgcctgctgtctgc aaggctgcagctgtactgggcatggacaaggctacgtctgaacctgtgtgtcgggtgttg gaggtgaccctgcgcagcacccacctccccagccgtatgggagcgctgcacggccttctc tatgtactggagtgtgacctgctggacgacacggccaagcaactgatacctactgtctct gactacatactgagtaacctacgggccatagcacactgtgtgaacctgcacaaccagcag catgtcttggtgatgtgtgctgtggccttctacatgatggagaactaccctctggatgta ggagctgagtttacagctggggttatacagatgtgtggtgtgatggtgtcagccagtgaa gactctacaccctcagtgatctaccactgtgtgttgcgtgggttggagcgcctcctgctg tcggagcaactatctcgtatggacggagaggcgctggttaaactgagtgtagacagggtt aacatgcccagccctcacagagccatggctgcactgggtctcatgctcacctgcatgtac acagcggtgcgtacctcagcctgtacagcagagtcagcgttgaggtcagaggttaaaggt caggggtcagaggttacctcgggtcctgttgctttctcctcaggcaaggagaaggccagc cctggtcgcccgaccgacgctgttgaccctcaggcccccgacagtgagtctgtcatcgtt gccatggagagggtctctgtgctcttcgacaggatccgtaagggtttccccagcgaggca cgggtagtggccaggatccttcctcagttcctggatgacttcttcccaccgcaggacgtc atgaacaaggtcatcggagagttcctgtccaatcagcagccttacccacagttcatggct accgtcgtctacaaggtgttccagaccctccatgctacaggccagtccagtatggtgaca gactgggtgttgctgtctctgtctaacttcacccagagaaccccagtagccatggcaatg tggagtctgtcctgtttctttatctctgcctccacctcccagtgggtctctgctctcctg ccccatgtcatcagccgtatgggtaagagtgatgtggtggacgtcaacctgttctgtctg gtagccatggacttctacagacaccagatagatgaggagttagaccgcagagccttccag tctgtcttccagaccgtagcctcacctggcaacccctatcagaaactactggactgtcta cagagtatccaccgagacacatcactctga

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