Coregonus clupeaformis (lake whitefish): 121562132
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Entry
121562132 CDS
T08357
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X2
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121562132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121562132
Enzymes [BR:
cclu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
121562132
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
121562132
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
RRM_Thc1
R3H
NCBP3
RRM_1
Motif
Other DBs
NCBI-GeneID:
121562132
NCBI-ProteinID:
XP_041730433
LinkDB
All DBs
Position
Unknown
AA seq
698 aa
AA seq
DB search
MEVTRTNFKDSLSTVYSAIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYMKLKKH
SMDFLLFQFGLCTFTYDQAESKYVIKTFNFYIFPKPFNRTSPDIKFICQSSSIDFLASQG
FDFNKVFRHGIPYLNQEEEVQLREQYEERRSQSNGSGNPSYISPNSNKGPGSIPEEHREY
IGRVIEKVESLFTTSEKTVDLEPCTGFQRKLIYQTLNWKFPKGLHVETLETEKKERYIQI
SKVDDEERKRRERQKQEREQEELNDAVGFSRVIHAISKSGKLVVGHNMLLDVMHTIHQFY
CVLPEDLNDFKEVTQCVFPRLLDTKLMATTQPFKELINITSLAELQKQLKESPFKPPKVV
TAEDFPSYDTAQEQLHEAGYDAYITGLCFIAMANYLGTFLTPPKAHIPSRSKLIEPFVNK
LFLMRIIDIPYLNISGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSA
FVSLSQTEQVQIAINTSRYAESYRIQTYAEYVQGRQQVRESQGHTTQSWDEDGWVKPHYT
SPSTVGDGPTGYSYGHNRQSSGKRCISPIQEEQPAEGGALSTHTDGWSGYAHCHTHSDTG
SKKIRTDGGCVRTYAGVVDSRTSEGWLKTQSGSDSSSMSPIQEEVGSEAVDDASDPAAGD
WQQQSSANQSKKGRKNNKKRKTDGAETTSSLFEVPQVW
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgacacgaacaaatttcaaagacagtttaagcactgtgtacagcgcaatagag
gaagcggactttctcgcaatcgatggggaattttcaggtattagcgatgggcccaacgtc
agcgcactaactaacgggttggacacgccagaggagcgctacatgaagctaaaaaagcat
tccatggacttcttgctgtttcagtttggactgtgtacattcacatatgaccaggcagag
tccaagtacgtcataaagacttttaatttttatatattcccaaagccattcaacagaacc
tcaccagacatcaagttcatctgccagagttccagcatagactttctggccagtcagggt
tttgacttcaacaaagtgttccgtcacgggatcccgtacctgaaccaggaagaggaagtg
cagctgcgggagcaatatgaggagaggcggagtcagagtaacggatcaggaaacccctcc
tacatctcccccaactccaacaaaggccctggcagcatcccagaggagcacagggagtac
atcggacgagtgatagagaaggtggaatcgctgttcactacctcagagaagactgtggac
ctggagccctgcactgggtttcagaggaaactgatctaccagacactcaactggaagttc
ccaaagggccttcacgtagagaccttggagacagagaagaaagagcgctacatccagatc
agcaaggtggacgatgaggagcggaagaggagagaacggcagaaacaggagagagaacag
gaggagctgaatgacgctgtgggattctccagggtcatacacgccatctccaaatctgga
aagttggtggttggccacaacatgctgttggacgtcatgcataccatccatcagttctac
tgcgtactgccagaggacctgaatgactttaaagaggtcactcagtgtgtcttccccagg
ctgttggacaccaagctcatggccacaacacaacctttcaaggagttgatcaacatcaca
tctctagcagagctgcagaaacagctgaaagagagccccttcaaacctcctaaagttgtg
acggcggaggatttccccagctacgatacagcccaggaacagctccacgaggcgggctac
gatgcctacatcactggcctctgcttcatcgccatggccaactacctaggtactttcctg
actccccccaaagcccacatcccgtcccgatctaaactcatcgaacccttcgtcaacaaa
ctgttcctgatgaggatcatagatatcccctacctcaacatcagcggaccagacctccag
cccaagagggatcatgttctgtacgtcaccttccctaaggagtggaagaccagtgacctc
taccagctattcagtgcctttggtaacatccaggtgtcgtggattgatgacacgtcagcg
tttgtgtctctgagtcagacggagcaggtgcagatcgcgattaacacgagtcgctatgcg
gagagctaccgtatccagacgtatgcggagtacgtccagggcagacagcaagtcagggag
agccagggccacactacccagtcctgggatgaggacggctgggttaaaccacactacacc
tccccctctaccgttggtgatggacctactggctacagctacggtcacaacaggcagtcg
tcggggaaacgctgcatcagtcctatccaggaggagcagcctgcggagggaggggcactg
agcacacacactgacgggtggagcggctacgctcactgtcacacacactccgacacgggc
agcaagaagatcaggactgacggggggtgtgtacggacgtatgccggagtagtggacagt
aggacgtcagaaggttggctgaaaactcagtctgggtctgattcgtcgagcatgagtccg
atccaggaagaggtggggtcagaggcggtggacgacgctagtgatccagcggcgggcgac
tggcaacagcagtcttcagccaatcagagcaagaagggccgcaagaacaacaagaagagg
aagactgatggtgcagagaccacgtcttctctgttcgaagttcctcaggtgtggtag
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