Coregonus clupeaformis (lake whitefish): 121562147
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Entry
121562147 CDS
T08357
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03030
DNA replication
cclu03410
Base excision repair
cclu03420
Nucleotide excision repair
cclu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121562147 (rfc1)
03410 Base excision repair
121562147 (rfc1)
03420 Nucleotide excision repair
121562147 (rfc1)
03430 Mismatch repair
121562147 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cclu03032
]
121562147 (rfc1)
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121562147 (rfc1)
DNA replication proteins [BR:
cclu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
121562147 (rfc1)
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
121562147 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_7
AAA_30
RuvB_N
AAA_16
nSTAND3
AAA_33
AAA_5
AAA_14
Rad17
AAA_17
RNA_helicase
NTPase_1
NPHP3_N
BRCT_2
AAA_19
AAA_18
Motif
Other DBs
NCBI-GeneID:
121562147
NCBI-ProteinID:
XP_045070583
LinkDB
All DBs
Position
Unknown
AA seq
1173 aa
AA seq
DB search
MDIRRFFAPSKPAAQKPSQNETLNTEEESKKKKKKKSVSTDEEVKKKKIATKITSPKVEE
KKKKKDGDKKRKKRAVIESDSEEEVVEQKPKAQKPDPPLPPAKKDPVQYVSETDSDSDNF
LTLKKPAKPQENVVAKPGKTRTGTKERSPPKPNPALATGKGGVKKSPPVPVTPKSAPPQT
KRTPTSVLDYFGSGSVQRSDKKLVASTKRKAPSQDHEESLTDEVIAQQLQMDEVMELERQ
VHEDEEFARTLAMLDNQPHAKKARKDSGEKRESATSPNKSSADSSHSSTKSQSQSNGRDH
NQEVIGPSPRKVPPPVKTSSKLAMMKKREEEEGGGKRDLNSEAPISPKTESLTPSGTDRK
SKPKTGSVTMMTTPTTLKTSPKKESTSPEDSERKRGNPSAFRSYLNRDGPRALGSKEIPT
GAENCLEGCVFVISGVLECMERDEAKSLIERYGGKVTGNVSKRTTYLVMGRDGGAAKTEK
AEGFGTKILDEDGLLELIRSKPGKKSKYLIAAEAENKVSKSRTPDTKTSPRTPKLSPKTP
PKTPNPSKPGSASRRGVGVGDSVTPPGRSTGSGVKRGLGLGGKSESASSSAAPSVPSFAG
EDFSLLWVDKYRPRNLKAVIGQQGDQSPANKLLRWLKNWHTHHAVGGAKPAGRGFGKFAS
AKDDGSSFKAALLSGPPGVGKTTTAALVCEELAYSYVEMNASCTRSKNSLKEVIAESLDN
TSINYFYTGSSQTVSSKHVLIMDEIDGMAGNEDRGGIQEMIGLIKQSKIPIICMCNDRNH
QKIRSLANYCFDLRFQRPRLEQIKGAMMSIAFKEGLKIPPPALNEMILASNQDIRQVLHN
LRMWSAKDKVMTYDRVKEDANNARKDMKLGPFDVCRKVFSKAEESSHMTLIDKSDLFFHD
YSLAPLFIQENYIHVKPAAAGGDLKSHLVLLSKTADSICDGDLVDRQIRSKQAWSLLPTQ
AIYSSVLPGELMRGFMNSFPSFPSWLGKFSSCNKHSRIIQELASHMSLRTLSSRQAVSLD
YLPYLRMALLCPLQRQGAEGAGQAVQLLDDYHLVREDVDSLMEISLWGGQPDPYAKLDPK
VKSAFTRAYNRETHLTPYSLQPIKKGRRGGGAEAELGGEGREEQAEEEEEEGVAADAMIK
QKKAKPSKEPKKEKATAGDSGKGKGKGKGKARK
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcggttctttgcaccaagcaaacccgcagcgcagaaaccctctcagaat
gaaaccctcaacacagaggaggagtccaagaagaagaagaagaagaaatccgtgtcaaca
gacgaagaagtgaagaaaaagaaaattgcgaccaagatcaccagccccaaggtggaggag
aagaagaagaagaaggacggtgataaaaagagaaagaagcgtgctgtcattgagtcagac
tctgaggaggaggtagtggagcagaagccgaaggcccagaaaccagaccctcctcttcct
cctgccaagaaagacccggtgcagtacgtctctgagacagattcagacagtgataacttc
ctgactctgaagaagcctgctaagccccaggagaatgtagtggccaaaccagggaagacc
cgaaccgggaccaaagagcggtcccccccgaaacccaaccctgcactcgccacagggaaa
ggaggggtaaagaagtctcctccagtccccgtcacccctaaatcagcgcccccgcagacc
aaacgcacccccacctctgtcctggactactttggcagtgggagtgtccagcgctccgac
aagaaactggtggctagtaccaagaggaaagctccctctcaggaccatgaggagtcgctg
actgatgaggtcatcgcccagcagctgcagatggacgaggtcatggagttggagaggcag
gtccatgaggatgaggagtttgccaggacactggccatgttggacaatcaaccacacgcc
aaaaaggctcgtaaggactctggtgagaagcgagagtctgccacgtcacccaacaaaagc
agcgctgactcctcccacagcagcactaaaagccaatcacagtccaatgggcgtgaccac
aaccaggaagtgatcggtccatcccctagaaaggtcccgcctcccgttaagaccagttcc
aaactggcgatgatgaagaaacgagaggaagaggagggaggagggaagagagatctgaat
agcgaagcacccatctctcccaaaacggagtccctaaccccttcaggcacagacaggaag
tccaagcccaaaacaggaagtgtaaccatgatgaccacacccacgactcttaaaacctcc
cccaagaaagagagcaccagtccagaggattcagagaggaagcgaggaaacccgtcagcc
ttccgtagttacctgaacagagacggacccagagccctggggtctaaagaaatacccact
ggagcagagaactgcctggagggatgtgtgtttgtgatatcaggtgtgttggagtgtatg
gagcgggatgaggccaagtccctgatagaacgctatggggggaaggtgaccgggaacgtc
agtaagaggaccacgtacctggtgatggggagagatggaggagcggccaagactgagaag
gcggaggggtttggtactaagattctggatgaggatggtctgttggagctgatcagaagt
aaaccagggaagaaatccaagtacctgattgctgcagaggcagagaacaaggtatctaag
agcagaaccccggacaccaagacctccccccgcacccccaaactctcccccaaaactccc
cccaagacccccaacccctccaaacctggctcagcgtcgaggcgaggagtcggggtgggg
gacagtgtgacccccccagggaggagtacaggttcaggtgtcaaaagggggctgggcttg
gggggtaagagcgaatcagcttcctcctctgccgctccgtctgtgccctcattcgcgggt
gaagatttcagtctgctgtgggtggacaagtaccgcccccggaatctgaaggctgtgatt
ggtcagcagggagaccagagcccggccaataagttgcttcgctggctgaagaactggcac
actcaccatgcagtgggaggggctaaaccagcagggagagggtttgggaagtttgccagt
gctaaggatgatggttcaagcttcaaggcagccctgctatctggacctccgggtgtgggc
aagaccaccacagctgccttggtctgtgaggagctggcctatagctatgtagagatgaat
gccagctgtacccgcagtaagaacagtctaaaagaggtgatcgctgagtctctggacaac
accagcatcaactacttctacacgggttcatctcagacagtcagtagtaaacatgttctc
atcatggatgagatcgatggcatggcaggcaacgaagaccgagggggaatacaggagatg
ataggtctgattaaacagtccaagatccccatcatctgtatgtgtaatgaccgtaaccac
cagaagatccgctccttggccaactactgctttgacctgcgcttccagagaccacgacta
gaacagatcaagggtgccatgatgtccattgctttcaaagagggtctgaaaatcccgcct
cctgccctaaacgagatgatcctggcgtccaatcaagacatccgacaggtcctccacaac
ttgagaatgtggtcggctaaggacaaggtcatgacctacgaccgggtcaaagaggacgcc
aacaacgcacgcaaggacatgaagctgggtccgtttgacgtgtgcaggaaggtgttctcc
aaggctgaggagtcaagtcacatgacgttgattgacaagtcagacctgttcttccatgat
tactctctggcgccgctcttcatccaagagaactacatacatgttaaacctgcagctgct
ggtggtgatctgaagtcccacctggtcctcctcagtaagacagctgattctatctgtgat
ggagacctggtggacagacaaatacgttccaaacaggcctggtctctactgcccactcag
gcgatctactccagtgtgttaccaggagagttgatgcgtggcttcatgaactccttcccc
tcctttccctcctggctgggaaagttctcctcctgcaataaacactctcggatcattcag
gagctggcctctcacatgagcctccggacattaagtagcagacaggcagtgagcctggac
tacctgccctacctccgcatggccctgttgtgtcctctccagaggcagggggcggagggg
gctggtcaggccgtccagctgttagatgactaccacctggtcagagaggatgtggacagc
ctcatggagatcagcctctggggggggcagcctgacccctatgctaaactagaccccaag
gtgaagtcagcgttcacgagggcctataaccgtgagacccacctgacaccctactccctc
caaccaatcaagaagggccgtcgtggcgggggagcggaggcggagctgggaggagagggg
cgagaggaacaggctgaggaagaggaggaggaaggtgttgcagctgacgccatgatcaaa
cagaagaaggccaaaccctccaaggagcccaaaaaggagaaggcaacagccggggattct
gggaagggaaagggcaaaggcaagggcaaagccaggaagtga
DBGET
integrated database retrieval system
